SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10398

Length: 471 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10398
TGAACCGTCTGAAATTCCCCCTGAACCCAAGCACTCCGTCACAGATCCATGTGACTGGGTGCTGAACAATGGCGGGATCATATCCTTACAGAATTCCCCCGCAGCAGAACGCCCTGGCCTCCAAGATATTGCTACTTCTGACGGCACTGCCGCTAACTTTAGCGCTGTTCGCTTTCGTTCTACAGTGGAGAGGGGGCCTGAACGATCCAGCCGGTCGATGGGCGGGAGATGGCAATAAATTTCCTGGTATGAGCACCGATTCGCCCTCTAATGGCCATTCTGTTACCGGTTCGGACTGCTCGGATCGGTTGGCTCAAAGCGTGACGCCGACATTTCCGTATTACAGAGGTTGGACGTTCGAATTCGCCGCAGATACACGCCCTAAGATATGTATTACTACAAGCACTTCAGCAGGGCTCGATCAGATTCTTCCTTGGAATATATTACCATAAAGTCATTGGTGTAACCAAC

Ace file of the UniGene biog2_v2.0_unigene10398 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10148	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	59%
Blast2go	sdl-1 protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	82%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	82%
Blast2go	plant-type cell wall modification involved in multidimensional cell growth	GO:0009831	Biological Process	82%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	82%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	GNAT domain	IPR000182	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	FBD	IPR006566	-	-
Sma3		IPR013596	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: D7SQ21

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 385 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 128 - 521

Fln protein: MAGSYPYRIPPQQNALASKILLLLTALPLTLALFAFVLQWRGGLNDPAGRWAGDGNKFPGMSTDSPSNGHSVTGSDCSDRLAQSVTPTFPYYRGWTFEFAADTRPKICITTSTSAGLDQILPWNILP*

Protein Length: 129

Fln nts: TGAACCGTCTGAAATTCCCCCTGAACCCAAGCACTCCGTCACAGATCCATGTGACTGGGTGCTGAACA_-_ATGGCGGGATCATATCCTTACAGAATTCCCCCGCAGCAGAACGCCCTGGCCTCCAAGATATTGCTACTTCTGACGGCACTGCCGCTAACTTTAGCGCTGTTCGCTTTCGTTCTACAGTGGAGAGGGGGCCTGAACGATCCAGCCGGTCGATGGGCGGGAGATGGCAATAAATTTCCTGGTATGAGCACCGATTCGCCCTCTAATGGCCATTCTGTTACCGGTTCGGACTGCTCGGATCGGTTGGCTCAAAGCGTGACGCCGACATTTCCGTATTACAGAGGTTGGACGTTCGAATTCGCCGCAGATACACGCCCTAAGATATGTATTACTACAAGCACTTCAGCAGGGCTCGATCAGATTCTTCCTTGGAATATATTACCATAAAGTCATTGGTGTAACCAAC

Fln Alignment:

biogeco2_mira_c6558___QWRGGLNDPAGRWAGDGNKFPGMSTDSPSN-GHSVTGSDCSDRLAQSVTPTFPYYRGWTFEFAADTRPKICITTSTSAGLDQILPW
D7SQ21__________________QWRGGVTDPATRWSPEAHKFPGMDSSPPTTIGHS-SASDCV-LLSRGSSPSFPYYRDWKFDVGSDLRPKICITTSTSAGLEQILPW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain