SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10379

Length: 231 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10379
ATTTAGTTGCCTATGCGGGGAATCCTATGGGTTCATATGCTGAAGAGCAAATTCTTCCTGCAAGTCAGGTTGTGCCATTTCCATCTACAATCGATCCTATTGTGGGTGCTGCAGTGATGCTGAAGGGTATGACTGTCCAGTTTCTTCTTCGGAGTTGCTTCAAGGTAGAGTCTGGACATACAATTCTTGTACATGCAGCAGCTGGGGGAGTGGGATCTTTGTTATGCCAAT

Ace file of the UniGene biog2_v2.0_unigene10379 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18251	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	NADPH2:quinone reductase [Arabidopsis thaliana] gb\|ABM06041.1\| At5g61510 [Arabidopsis thaliana] gb\|AED97477.1\| NADPH2:quinone reductase [Arabidopsis thaliana]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	quinone oxidoreductase 1	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to high light intensity	GO:0009644	Biological Process	0.0	85%
Blast2go	cell differentiation	GO:0030154	Biological Process	0.0	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P243

Fln msg: Distance to subject end: 168 aas, your sequence is shorter than subject: 76 - 327

Fln protein: LVAYAGNPMGSYAEEQILPASQVVPFPSTIDPIVGAAVMLKGMTVQFLLRSCFKVESGHTILVHAAAGGVGSLLCQ

Protein Length: 77

Fln nts: ATTTAGTTGCCTATGCGGGGAATCCTATGGGTTCATATGCTGAAGAGCAAATTCTTCCTGCAAGTCAGGTTGTGCCATTTCCATCTACAATCGATCCTATTGTGGGTGCTGCAGTGATGCTGAAGGGTATGACTGTCCAGTTTCTTCTTCGGAGTTGCTTCAAGGTAGAGTCTGGACATACAATTCTTGTACATGCAGCAGCTGGGGGAGTGGGATCTTTGTTATGCCAAT

Fln Alignment:

biogeco2_mira_c6531___LVAYAGNPMGSYAEEQILPASQVVPFPSTIDPIVGAAVMLKGMTVQFLLRSCFKVESGHTILVHAAAGGVGSLLCQ
A9P243__________________LVAYAGNPMGSYAEEQILPANQVVPFPSTLDPILGAAVMLKGMTVQYLLRSCFKVEPGHTILVHAAAGGVGSLLCQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
168		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain