SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10282

Length: 354 nt

UniGene Fasta

>biog2_v2.0_unigene10282
GTGCAAACACAGTCAGGAATGCTAATGATCTGAATGATGTATCTCAAAATTTAAACAGAGTCAAGAGCTCCAAGGAACCGAAGGGCCCAGAGAGAACACAATCCCAGAGAAAACTTGCTGAGTGTATTTCCACTAGTGATGATGAGGAATGGTCTGCTCTTGATGGTGTTACAAGGGTGAACTCTCTTCTTAATCTTCCCAGGTTTTTGACGGGAGACAAAAAGGTTGGAGTACTGAGGAAGTGGCTTTGAATCCTCTCAGATAAATATCAGGTTTGGGAGCCTCAATGGGCTCAATTGTCAGTTTTTAAATCGTGTGTCCAACTTGCTTTTGTTGGACTTGGATGGTATCTTA

Ace file of the UniGene biog2_v2.0_unigene10282

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9512	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase-2c, putative n=1 Tax=Ricinus communis RepID=B9RM68_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein phosphatase 2c	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	75%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLH8

Fln msg: your sequence is shorter than subject: 83 - 526

Fln protein: ANTVRNANDLNDVSQNLNRVKSSKEPKGPERTQSQRKLAECISTSDDEEWSALDGVTRVNSLLNLPRFLTGDKKVGVLRKWL*

Protein Length: 84

Fln nts: GTGCAAACACAGTCAGGAATGCTAATGATCTGAATGATGTATCTCAAAATTTAAACAGAGTCAAGAGCTCCAAGGAACCGAAGGGCCCAGAGAGAACACAATCCCAGAGAAAACTTGCTGAGTGTATTTCCACTAGTGATGATGAGGAATGGTCTGCTCTTGATGGTGTTACAAGGGTGAACTCTCTTCTTAATCTTCCCAGGTTTTTGACGGGAGACAAAAAGGTTGGAGTACTGAGGAAGTGGCTTTGA___ATCCTCTCAGATAAATATCAGGTTTGGGAGCCTCAATGGGCTCAATTGTCAGTTTTTAAATCGTGTGTCCAACTTGCTTTTGTTGGACTTGGATGGTATCTTA

Fln Alignment:

biogeco2_mira_c6368___ANTVRNANDLNDVSQNLNRVKSSKEPKGPERTQSQRKLAECISTSDDEEWSALDGVTRVNSLLNLPRFLTGDKKVGVLRKWL
B8LLH8__________________ANTVRNVNDLNEASQNLNRVKSSKELKCPERTQSQRKLAECISTGDDEEWSALDGVTRVNSLLNLPRFLTGDRKVGVLRKWL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
13	33			66	0.997458
14		66		33	0.997461
15	66		33		0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain