SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10269

Length: 194 nt

UniGene Fasta

>biog2_v2.0_unigene10269
TCATAGCAGAAAAATTTGGTCTAGAGCCATCACCACCATACGAGGGTGAAGGCTTTAGACTGGTTGAAGTTATGAAAGACAAAGGTCCAGTCTGGGATGCAATTGTCAGAGAAAATAATCTCCGCCCAACAAAGATTGGAGAAGTGGGAAACTGGTGGTTTGCAGATGCTATATTAAATCTTAACCGGCAAATG

Ace file of the UniGene biog2_v2.0_unigene10269

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2208	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Progesterone 5beta reductase-A n=4 Tax=Solanaceae RepID=C0SUC5_TOBAC	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	progesterone 5-beta-reductase	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	75%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	75%
Blast2go	steroid metabolic process	GO:0008202	Biological Process	75%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	75%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	75%
Blast2go	enone reductase activity	GO:0035671	Biological Process	75%

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLZ6

Fln msg: Distance to subject end: 36 aas, your sequence is shorter than subject: 64 - 399

Fln protein: IAEKFGLEPSPPYEGEGFRLVEVMKDKGPVWDAIVRENNLRPTKIGEVGNWWFADAILNLNRQM

Protein Length: 65

Fln nts: TCATAGCAGAAAAATTTGGTCTAGAGCCATCACCACCATACGAGGGTGAAGGCTTTAGACTGGTTGAAGTTATGAAAGACAAAGGTCCAGTCTGGGATGCAATTGTCAGAGAAAATAATCTCCGCCCAACAAAGATTGGAGAAGTGGGAAACTGGTGGTTTGCAGATGCTATATTAAATCTTAACCGGCAAATG

Fln Alignment:

biogeco2_mira_c6351___IAEKFGLEPSPPYEGEGFRLVEVMKDKGPVWDAIVRENNLRPTKIGEVGNWWFADAILNLNRQM
B8LLZ6__________________IAEKFDLEPLP-YKGEGFSLAEAMKDKGPVWDALVRENKLHPTKIEEVGNWWFAEFTLNLPQEM

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
92	25	75			0.996473
132	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain