SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10239

Length: 262 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10239
CCCCAAAAGCGCAGCTTGGGTTGCCAGAACTTCAACTTGGGATTATTCCAGGATTTGGAGGTACGCAGCGCCTTCCTCGTCTTGTAGGGCTTCAAAAGGCGGTTGAAATGATGCTGTTATCAAAATCGATCATGTCAGAGGAGGGAGTAAACTAGGTTTAATTGACGCAATTGTATCTCCGGGAGAGTTGATGGCCACAGCACGAATGTGGGCTTTAGATATTGCAGAACGGCGGAGACCCTGGATAATTAGTCTAAAAAGG

Ace file of the UniGene biog2_v2.0_unigene10239 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22548	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	[I] COG1250 3-hydroxyacyl-CoA dehydrogenase	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	peroxisomal fatty acid beta-oxidation multifunctional protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	3-hydroxyacyl-CoA dehydrogenase, conserved site	IPR006180	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, NAD binding	IPR006176	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, C-terminal	IPR006108	-	-
Sma3	Crotonase, core	IPR001753	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	Enoyl-CoA hydratase/isomerase, conserved site	IPR018376	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR51

Fln msg: Overlapping hits, possible frame ERROR between 146 and 143, Distance to subject end: 510 aas, your sequence is shorter than subject: 87 - 723

Fln protein: PKAQLGLPELQLGIIPGFGGTQRLPRLVGLQKAVEMMLLSKSIMSExxxKLGLIDAIVSPGELMATARMWALDIAERRRPWIISLKR

Protein Length: 88

Fln nts: CCCCAAAAGCGCAGCTTGGGTTGCCAGAACTTCAACTTGGGATTATTCCAGGATTTGGAGGTACGCAGCGCCTTCCTCGTCTTGTAGGGCTTCAAAAGGCGGTTGAAATGATGCTGTTATCAAAATCGATCATGTCAGAGxxxxxxxxxAAACTAGGTTTAATTGACGCAATTGTATCTCCGGGAGAGTTGATGGCCACAGCACGAATGTGGGCTTTAGATATTGCAGAACGGCGGAGACCCTGGATAATTAGTCTAAAAAGG

Fln Alignment:

biogeco2_mira_c6310___PKAQLGLPELQLGIIPGFGGTQRLPRLVGLQKAVEMMLLSKSIMSEExSKLGLIDAIVSPGELMATARMWALDIAERRRPWIISLKR
B8LR51__________________PKALLGLPELQLGIFPGFGGTQRLPRLVGLQKAVEMMLLSKSIMSEExNKLGLIDAVVSPGELMTTARMWALDIAERRRPWIISLKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain