SustainPineDB

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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10236

Length: 387 nt

UniGene Fasta

>biog2_v2.0_unigene10236
TAGGATCTACTGTAATTTCTGCTAGAAACAAAGAACAAACAATCAGGCAGTAGCTCCTCTCAATCTGCTCAAGCAGAGACTTTGACTGCAAGTGAAGGCAATGTGTACGGAGATGGGTGGGTCTTCCTCAATCCTGATCTGATATGTGACAATATTCATGGAATTTTATGGAGGGTCCATTTAGACCTAGAGGCTATTGCTGCTAGCAGTTCAGAAGTACCTTCGCTGTTAGCTTTTCTGCAACGGCGTAGACTGGAGGCAGACAAGGCTAAGCAGTTGTCTTTAGCGGTCATGCGGTCCATCATTTTGGAGAGGAGAGCTCTTTCTGTGATTGTGAATGCAATGGATATACTGACAGCTTCATATTCACACGCTATGAAACTGGCA

Ace file of the UniGene biog2_v2.0_unigene10236

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22440	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Os10g0400900 protein (Fragment) n=3 Tax=Oryza sativa Japonica Group RepID=Q0IXT3_ORYSJ	-	-	46%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	62%
Blast2go	colon cancer-associated protein mic1-like containing expressed	-	-	67%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Colon cancer-associated Mic1-like	IPR009755	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9STH9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 244 aas, your sequence is shorter than subject: 129 - 680

Fln protein: *DLL*FLLETKNKQSGSSSSQSAQAETLTASEGNVYGDGWVFLNPDLICDNIHGILWRVHLDLEAIAASSSEVPSLLAFLQRRRLEADKAKQLSLAVMRSIILERRALSVIVNAMDILTASYSHAMKLA

Protein Length: 130

Fln nts: TAGGATCTACTGTAATTTCTGCTAGAAACAAAGAACAAACAATCAGGCAGTAGCTCCTCTCAATCTGCTCAAGCAGAGACTTTGACTGCAAGTGAAGGCAATGTGTACGGAGATGGGTGGGTCTTCCTCAATCCTGATCTGATATGTGACAATATTCATGGAATTTTATGGAGGGTCCATTTAGACCTAGAGGCTATTGCTGCTAGCAGTTCAGAAGTACCTTCGCTGTTAGCTTTTCTGCAACGGCGTAGACTGGAGGCAGACAAGGCTAAGCAGTTGTCTTTAGCGGTCATGCGGTCCATCATTTTGGAGAGGAGAGCTCTTTCTGTGATTGTGAATGCAATGGATATACTGACAGCTTCATATTCACACGCTATGAAACTGGCA

Fln Alignment:

biogeco2_mira_c6306___LTASEGNVYGDGWVFLNPDLICDNIHGILWRVHLDLEAIAASSSEVPSLLAFLQRRRLEADKAKQLSLAVMRSIILERRALSVIVNAMDILTASYSHAMK
A9STH9__________________LSTAEATIYGKGWVFINPDLVLDHMHGLLWRVRLDLEAVAASSSNLPSLLSFLQRRRFDAPKAKELSLIVIKSMIIERRSLRLIASAMDVVTASYAQATR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain