SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10193

Length: 336 nt

UniGene Fasta

>biog2_v2.0_unigene10193
TGAAGAAGTCCTTAAAGCAAGAATGGAAGGGGGATAATGGTGTGAAGGCAAGATTTCATACAAATGGGAAGAGTCTAAGAATAAAGTCACCGATCCCATCACAATAACAATTCCTGGAGCGCGGCAGGGGGAGTTCAAAACCATTCGAGTTGAAAAATATACTGTTATCAATGATACCAAGTCTTCAGATGCTAAGATCCGAGTCATTCCACTTGAAGAAGGCGGTGGGAGCAGCAGTAGCAGCAGCAGCCACTCAGATGATGATGAGGCGTGTAAGAAAATCCAGGGTGTGTTGGCCAAAAGGNGAGCTGGAGCAACTGGTCAACTCAGTTGTAA

Ace file of the UniGene biog2_v2.0_unigene10193

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26285	1/3
SustainPine v2.0	sp_v2.0_unigene33701	2/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative calmodulin-binding protein [Glycine max]	-	-	5.0e-26	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	bcl-2-associated athanogene 7	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	78%
Blast2go	cellular response to heat	GO:0034605	Biological Process	78%
Blast2go	cellular response to unfolded protein	GO:0034620	Biological Process	78%
Blast2go	cellular response to cold	GO:0070417	Biological Process	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABG1

Fln msg: Distance to subject end: 158 aas, your sequence is shorter than subject: 111 - 413

Fln protein: EEVLKARMEGG*WCEGKISYKWEESKNKVTDPITITIPGARQGEFKTIRVEKYTVINDTKSSDAKIRVIPLEEGGGSSSSSSSHSDDDEACKKIQGVLAKRRAGATGQLSC

Protein Length: 112

Fln nts: TGAAGAAGTCCTTAAAGCAAGAATGGAAGGGGGATAATGGTGTGAAGGCAAGATTTCATACAAATGGGAAGAGTCTAAGAATAAAGTCACCGATCCCATCACAATAACAATTCCTGGAGCGCGGCAGGGGGAGTTCAAAACCATTCGAGTTGAAAAATATACTGTTATCAATGATACCAAGTCTTCAGATGCTAAGATCCGAGTCATTCCACTTGAAGAAGGCGGTGGGAGCAGCAGTAGCAGCAGCAGCCACTCAGATGATGATGAGGCGTGTAAGAAAATCCAGGGTGTGTTGGCCAAAAGGaGAGCTGGAGCAACTGGTCAACTCAGTTGTAA

Fln Alignment:

biogeco2_mira_c6234___KARMEGG*WCEGKISYKWEESKNKVTDPITITIPGARQGEFKTIRVEKYTVINDTKSSDAKIRVIPLXXXXXXXXXXXXXXXXXXACKKIQGVLAKRRAGATGQLS
D5ABG1__________________KKEWKGENGVKGKFSYKYEESKKKITDPITIIIPGAREGESKTIRVEKYTVINDTKSSDAKIRVIPLEECDGSSSSSSSHTDDDEASKKIQGVLARRRAAANAQLS

SSRs (tot: 1)

Start position	End position	Sequence	Length
239	250	AGC AGC AGC AGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain