SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10114

Length: 379 nt

UniGene Fasta

>biog2_v2.0_unigene10114
ATGGGGAAATGTCCTTTCCCAGCATGTAGGCCTCTCTATCATCGGGGGAATATATGATTGAATTGAAGATCCAGAAAGTGGAGATCATGGCGAACAGGGTTTATCAACGTTTGCAAGATATCACGGTCTCTGAGATTGCAGGCCTTGGTACTCCCCAGGCCGAGGCTGTGGCTCTTCATGAGAAGTTGCAGTCAATTTTGAAGGAATGTGGAGGCTGTGGGGCTCCAGCATGGGACCTGATTTCGCACAAGCTGCTTCGACCCGATCACCCGTTTGCTCTTCATCAAATGATGTACTACGGCTGTTACAGAGACTGGGACTCCTCGCGGAACCGGTCCCCCGCTGCATGGATCCCCTCGCTAGCAAGTGCAATGTCAAC

Ace file of the UniGene biog2_v2.0_unigene10114

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9124	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	acyl-activating enzyme 17 [Arabidopsis thaliana] gb\|AED93113.1\| acyl-activating enzyme 17 [Arabidopsis thaliana]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	acyl-activating enzyme 17	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	77%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	77%
Blast2go	ligase activity	GO:0016874	Molecular Function	77%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-
Sma3	Mediator complex, subunit Med13	IPR009401	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PR72

Fln msg: Distance to subject end: 632 aas, your sequence is shorter than subject: 108 - 734

Fln protein: MIELKIQKVEIMANRVYQRLQDITVSEIAGLGTPQAEAVALHEKLQSILKECGGCGAPAWDLISHKLLRPDHPFALHQMMYYGCYRDWDSSRNRSPAAWIPSLASAMS

Protein Length: 109

Fln nts: ATGGGGAAATGTCCTTTCCCAGCATGTAGGCCTCTCTATCATCGGGGGAATAT_-_ATGATTGAATTGAAGATCCAGAAAGTGGAGATCATGGCGAACAGGGTTTATCAACGTTTGCAAGATATCACGGTCTCTGAGATTGCAGGCCTTGGTACTCCCCAGGCCGAGGCTGTGGCTCTTCATGAGAAGTTGCAGTCAATTTTGAAGGAATGTGGAGGCTGTGGGGCTCCAGCATGGGACCTGATTTCGCACAAGCTGCTTCGACCCGATCACCCGTTTGCTCTTCATCAAATGATGTACTACGGCTGTTACAGAGACTGGGACTCCTCGCGGAACCGGTCCCCCGCTGCATGGATCCCCTCGCTAGCAAGTGCAATGTCAAC

Fln Alignment:

biogeco2_mira_c6115___LQDITVSEIAGLGTPQAEAVALHEKLQSILKECGGCGAPAWDLISHKLLRPDHPFALHQMMYYGCYRDWDSSRNRSPAAWIPSLASA
C0PR72__________________VRELGVDDIVQAGLPPHKAAIFYGKLQRAIAELGGSETLLWHRVSKELLNPRYAHTLHQLMYYSIYKDWDSAKNGPPLAWFPTQESA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain