SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10113

Length: 515 nt

UniGene Fasta

>biog2_v2.0_unigene10113
ATGGAGGGAGAGAGCCAAGAATGCGGCATACAAGACGCCTCCGGCCGCAGCTGCTGCAAAGATGGACACTTACATTCATTTTTCGCCCAAAGGAAGTGGGAAGTCGTCACTCAATCTAGAACGCAGATTAGATCATGATGGACATCCTTTGGCAATAGCATCAGTTGATGCAACTGCTGCCAATGGGGTACCGCCATGGAATTGGAGGGATGCCACTGCAAATGGTGATCATCACACGTCTTATGGAGGGAAGGTGATTGTGGTAAAGTGTGGGGAATTTACGAGGAGGATTGGTGTTGATGGCACAGCTGAAGCTATCAAAGAAGCTGTTAAATGTGCATTTGGGTTGCGTACCAGGAGGGCGTTTTGGTTAGAAGATGAAGATGGAGTTGTGCGTTGCCTTGACAGAGATATGCCCTTGGGGACATATATACTTCATCTGGATGATGGTTTGACTATCAAGATCTGCACTTACGATGAATCTGATCGTCTGACGGGTGCCACTGAAGAGAAGA

Ace file of the UniGene biog2_v2.0_unigene10113

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10022	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RMJ9_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	dna-binding protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	73%
Blast2go	identical protein binding	GO:0042802	Molecular Function	73%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	73%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	SANT/Myb domain	IPR001005	-	0.0	-
Sma3	Myb-like domain	IPR017877	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQR4

Fln msg: Distance to subject end: 48 aas, your sequence is shorter than subject: 171 - 348

Fln protein: WRERAKNAAYKTPPAAAAAKMDTYIHFSPKGSGKSSLNLERRLDHDGHPLAIASVDATAANGVPPWNWRDATANGDHHTSYGGKVIVVKCGEFTRRIGVDGTAEAIKEAVKCAFGLRTRRAFWLEDEDGVVRCLDRDMPLGTYILHLDDGLTIKICTYDESDRLTGATEEK

Protein Length: 172

Fln nts: ATGGAGGGAGAGAGCCAAGAATGCGGCATACAAGACGCCTCCGGCCGCAGCTGCTGCAAAGATGGACACTTACATTCATTTTTCGCCCAAAGGAAGTGGGAAGTCGTCACTCAATCTAGAACGCAGATTAGATCATGATGGACATCCTTTGGCAATAGCATCAGTTGATGCAACTGCTGCCAATGGGGTACCGCCATGGAATTGGAGGGATGCCACTGCAAATGGTGATCATCACACGTCTTATGGAGGGAAGGTGATTGTGGTAAAGTGTGGGGAATTTACGAGGAGGATTGGTGTTGATGGCACAGCTGAAGCTATCAAAGAAGCTGTTAAATGTGCATTTGGGTTGCGTACCAGGAGGGCGTTTTGGTTAGAAGATGAAGATGGAGTTGTGCGTTGCCTTGACAGAGATATGCCCTTGGGGACATATATACTTCATCTGGATGATGGTTTGACTATCAAGATCTGCACTTACGATGAATCTGATCGTCTGACGGGTGCCACTGAAGAGAAGA

Fln Alignment:

biogeco2_mira_c6109___MDTYIHFSPKGSGKSSLNLERRLDHDGHPLAIASVDATAANGVPPWNWRDATANG-DHHTSYGGKVIVVKCGEFTRRIGVDGTAEAIKEAVKCAFGLRTRRAFWLEDEDGVVRCLDRDMPLGTYILHLDDGLTIKICTYDESDRLTGATEEK
A9NQR4__________________LDSYPHFSPKGTGRSPFNLERRLDHDGLPLALPLSDATAANGTPPWNWRDATGNGGENHTSYNGKVILVKWGDITRRIGIDGTAEAISGAIRPAFGLRTKRAFWLQDEDGVVHSLDRNMPLGTYILCLDEGLTIKVCNYDESDSLTGTADEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain