SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10109

Length: 490 nt

UniGene Fasta

>biog2_v2.0_unigene10109
AGGACTTGAAATCCCTGGTTCATTATATTCCACGTCGTTGTCAGTGCATCCTAATGTCTGCAACTTCAAGATGTCGAGAAAATAAAAAAGCTTATGCTGCATAGTCCTGTAATTCTGACACTAACTGAAGTGGAAGGAAACGAGTATGATGGAGTTGTACCCAACAGTGTGCAGCAATTTTGGATTTCATGTGATGTGCATGACAAACTACTTTACATTCTTGCCCTTCTCAAACTGGAATTGGTTCAAAAGAAAGCTTTAATCTTTGTTAATTCTATTGACATGGGTTTCAGGTTGAAACTCTTCCTTGAACAGTTTGGATCAAATCTGCTGTCTTGAATTCAGAGTTGCCACAAAACTCACGTCTCCACATGCTTGAGGAGTTCAATGCTGGATTGTTTGATTATTTGATAGCAATAGATGATAGCAAACCGGAAAAAGTTGAGAATGGACCTATTGAAGAGAGAATGGCCAATCGCAAACGATCAAG

Ace file of the UniGene biog2_v2.0_unigene10109

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2133	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SX92_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	dead box atp-dependent rna	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVB7

Fln msg: Separated hits, possible frame ERROR between 68 and 70, Distance to subject end: 249 aas, your sequence is shorter than subject: 163 - 465

Fln protein: DLKSLVHYIPRRCQCILMSATxxDVEKIKKLMLHSPVILTLTEVEGNEYDGVVPNSVQQFWISCDVHDKLLYILALLKLELVQKKALIFVNSIDMGFRLKLFLEQFGSNLLS*IQSCHKTHVSTCLRSSMLDCLII**Q*MIANRKKLRMDLLKREWPIANDQ

Protein Length: 164

Fln nts: AGGACTTGAAATCCCTGGTTCATTATATTCCACGTCGTTGTCAGTGCATCCTAATGTCTGCAACTTCxxxAGATGTCGAGAAAATAAAAAAGCTTATGCTGCATAGTCCTGTAATTCTGACACTAACTGAAGTGGAAGGAAACGAGTATGATGGAGTTGTACCCAACAGTGTGCAGCAATTTTGGATTTCATGTGATGTGCATGACAAACTACTTTACATTCTTGCCCTTCTCAAACTGGAATTGGTTCAAAAGAAAGCTTTAATCTTTGTTAATTCTATTGACATGGGTTTCAGGTTGAAACTCTTCCTTGAACAGTTTGGATCAAATCTGCTGTCTTGAATTCAGAGTTGCCACAAAACTCACGTCTCCACATGCTTGAGGAGTTCAATGCTGGATTGTTTGATTATTTGATAGCAATAGATGATAGCAAACCGGAAAAAGTTGAGAATGGACCTATTGAAGAGAGAATGGCCAATCGCAAACGATCAAG

Fln Alignment:

biogeco2_mira_c6105___DLKSLVHYIPRRCQCILMSATSxDVEKIKKLMLHSPVILTLTEVEGNEYDGVVPNSVQQFWISCDVHDKXXXXXXXXXXXXVQKKALIFVNSIDMGFRLKLFLEQFG
A9NVB7__________________DLKSLVHHIPRRCQCILMSATSxDVEKIKKLVLHSPVILTLTEVEGNEYNGVVPNSVQQFWISCDVHDKLLYILALLKLELVQKKALIFVNSIDTGFRLKLFLEQFG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain