SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10087

Length: 269 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10087
ATGGGCATACAAACTTACGCAGAGTGACATATCTTGTGTTAGATGAAGCTGATCGCATGCTAGACATGGGATTTGAACCGACAAATTAAGAAAAATTGTAACTCAAATTCGCCCGGATAGGCAGACATTGTATTGGAGTGCTACTTGGCCAAGAGAAGTGGAAAATTTAGCAAGGCAGTTTTTGCATAATCCTTACAAGGTCATTATTGGATCTTCAGATTTGAAAGCTAACCATGCAATTAATCAGATTGTTGAGGTTATCTCGGAGT

Ace file of the UniGene biog2_v2.0_unigene10087 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6469	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 20 [Arabidopsis thaliana] sp\|Q9C718.1\|RH20_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 20 gb\|AAG50841.1\|AC073944_8 ethylene-responsive RNA helicase, putative [Arabidopsis thaliana] gb\|AAL32823.1\| Unknown pro	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	dead-box atp-dependent rna helicase	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ26

Fln msg: Separated hits, possible frame ERROR between 80 and 83, Distance to subject end: 195 aas, your sequence is shorter than subject: 89 - 593

Fln protein: GHTNLRRVTYLVLDEADRMLDMGFExxKLRKIVTQIRPDRQTLYWSATWPREVENLARQFLHNPYKVIIGSSDLKANHAINQIVEVISE

Protein Length: 90

Fln nts: ATGGGCATACAAACTTACGCAGAGTGACATATCTTGTGTTAGATGAAGCTGATCGCATGCTAGACATGGGATTTGAACCxxxCAAATTAAGAAAAATTGTAACTCAAATTCGCCCGGATAGGCAGACATTGTATTGGAGTGCTACTTGGCCAAGAGAAGTGGAAAATTTAGCAAGGCAGTTTTTGCATAATCCTTACAAGGTCATTATTGGATCTTCAGATTTGAAAGCTAACCATGCAATTAATCAGATTGTTGAGGTTATCTCGGAGT

Fln Alignment:

biogeco2_mira_c6061___HTNLRRVTYLVLDEADRMLDMGFEPxKLRKIVTQIRPDRQTLYWSATWPREVENLARQFLHNPYKVIIGSSDLKANHAINQIVEVISE
C0PQ26__________________HTNLRRVTYLVLDEADRMLDMGFEPxQIRKIITQIRPDRQTLYWSATWPREVENLARQFLHNPYKVIIGSADLKANHAISQIVEVVSE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain