SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10065

Length: 443 nt

UniGene Fasta

>biog2_v2.0_unigene10065
GGCTACAGAGGGGCGTCGAAGGGAATGTCCAAAACGATATTGGTTTCTCCTACCTGTATAAATTGGGCTTCCATTGCCCATTATGGGGGCTTGGATTTTGTTCTATTCATTTCACGAGAGGATATCATCATTCAGCTACACAGAGACGGTAGCTCTGAGAACTAAGTTGGTTGCTATCCGTATCTCTCCACCCGAATACTATTGGCTTAGAGAGTAAAGTTGTGTCAGCAGAAGCAAAACAAACATACTGCAAAAGTTATAAGAAAATGGTGCGTCGCAAGGGAAACAAGGGAGACAAAGGCAGTTCAAGCCTGGATGCCCAAGTCACCAGAATGAGCTTTGAAGATGGAGATAACAAGACAGAGACATCCTCCATGGCCGGACTTACTGAAGAAGAATCGATGGATGTATTCACGGGCTCTGATCAGACTAGTGCCGATTAT

Ace file of the UniGene biog2_v2.0_unigene10065

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1076	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Protein arginine N-methyltransferase 1 n=2 Tax=Andropogoneae RepID=B6TIG8_MAIZE	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	arginine methyltransferease	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone-arginine N-methyltransferase.	EC:2.1.1.125	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	peptidyl-arginine N-methylation	GO:0035246	Biological Process	85%
Blast2go	histone arginine methylation	GO:0034969	Biological Process	85%
Blast2go	identical protein binding	GO:0042802	Molecular Function	85%
Blast2go	histone-arginine N-methyltransferase activity	GO:0008469	Molecular Function	85%
Blast2go	cytoplasm	GO:0005737	Cellular Component	85%
Blast2go	nucleolus	GO:0005730	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV48

Fln msg: Distance to subject end: 319 aas, your sequence is shorter than subject: 59 - 379

Fln protein: MVRRKGNKGDKGSSSLDAQVTRMSFEDGDNKTETSSMAGLTEEESMDVFTGSDQTSADY

Protein Length: 60

Fln nts: GGCTACAGAGGGGCGTCGAAGGGAATGTCCAAAACGATATTGGTTTCTCCTACCTGTATAAATTGGGCTTCCATTGCCCATTATGGGGGCTTGGATTTTGTTCTATTCATTTCACGAGAGGATATCATCATTCAGCTACACAGAGACGGTAGCTCTGAGAACTAAGTTGGTTGCTATCCGTATCTCTCCACCCGAATACTATTGGCTTAGAGAGTAAAGTTGTGTCAGCAGAAGCAAAACAAACATACTGCAAAAGTTATAAGAAA_-_ATGGTGCGTCGCAAGGGAAACAAGGGAGACAAAGGCAGTTCAAGCCTGGATGCCCAAGTCACCAGAATGAGCTTTGAAGATGGAGATAACAAGACAGAGACATCCTCCATGGCCGGACTTACTGAAGAAGAATCGATGGATGTATTCACGGGCTCTGATCAGACTAGTGCCGATTAT

Fln Alignment:

biogeco2_mira_c6031___MVRRKGNKGDKGSSSLDAQVTRMSFEDGDNKTETSSMAGLTEEESM-DVFTGSDQTSADY
A9NV48__________________MVRRKGNKGDKGSSSLDAQVTRMSFEDGDNKTETSSVAELTQEESMVDVFTGSDQTSADY

SNPs (tot: 4)

Position	A %	G %	T %	Probability
84	33		66	0.997471
86		66	33	0.997458
87		66	33	0.997458
88		66	33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain