SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10024

Length: 224 nt

UniGene Fasta

>biog2_v2.0_unigene10024
CTACACACTTATGTTCTGTCTTGGTTTGGGAATACTCTGTGGAGCTGTTGGTTATTTGGGCTCCTCATTATTTGTTAGAAGAATTTATACTAACATCAAATGTGACTGAGGATAAGATGGTAGAGTTCGAACGACAAACAAATTTCATCAAGTTGCACAATGATGTCATCCTGAGCCGATGGCAGAAAGGTCAAAATTCTCTGTGTGGAGTTCCAATTTATTAT

Ace file of the UniGene biog2_v2.0_unigene10024

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6846	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	transmembrane nine 1 [Arabidopsis thaliana] gb\|AAL48237.1\|AF446365_1 At1g10950/T19D16_13 [Arabidopsis thaliana] gb\|AAK96857.1\| endomembrane protein EMP70 precusor isolog [Arabidopsis thaliana] gb\|AAL36263.1\| putative endomembrane protein EMP70 precusor is	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	transmembrane 9 superfamily member 3-like	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	88%
Blast2go	integral to membrane	GO:0016021	Cellular Component	88%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nonaspanin (TM9SF)	IPR004240	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A861

Fln msg: atg_distance in limit (1-15): atg_distance = 13,

Fln protein: MFCLGLGILCGAVGYLGSSLFVRRIYTNIKCD*

Protein Length: 34

Fln nts: CTACACACTT_-_ATGTTCTGTCTTGGTTTGGGAATACTCTGTGGAGCTGTTGGTTATTTGGGCTCCTCATTATTTGTTAGAAGAATTTATACTAACATCAAATGTGACTGA___GGATAAGATGGTAGAGTTCGAACGACAAACAAATTTCATCAAGTTGCACAATGATGTCATCCTGAGCCGATGGCAGAAAGGTCAAAATTCTCTGTGTGGAGTTCCAATTTATTAT

Fln Alignment:

biogeco2_mira_c5959___YTLMFCLGLGILCGAVGYLGSSLFVRRIYTNIKCD
D5A861__________________YTLMFCLGLGILCGAVGYLGSTLFVRRIYRNIKCD

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
57			33	66	0.997455
58			33	66	0.997457
71	66		33		0.997476
139	66		33		0.997476
203		33		66	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain