SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10011

Length: 553 nt

UniGene Fasta

>biog2_v2.0_unigene10011
AACAACTTTAAATTACATGTTGATGGGGTTACCATGAATGTATCTTTGGCAGTCTATTCTAAGGACTCCGTTGAACATATACATATTTGGTATGGCAACTGTCACCATCATTTCATGCGAGATATAATGAAATATCATGATGAAGAGGATGTTCAAACTAAAGATAAGTCTGACACATTCATTCCAAGCGTTAAAGGATCAGTGGTTGCGCCAATGGCTGGATGCGTTGTGAAGGTTCTAGTAGAAGATGGGGCAATGGTAAAGAAGGGCCAATCTATTCTAGTTTTAGAAGCCATGAAAATGGAGCATGTAGTCAAAGCACCATATGAAGGTTGTGTTCGAAAGCTACAGGCTGTGGTTGGGCAGCAGGTGTTCGATAATTCTAGTCTTTTCAGTATTGAGGATAGATAATGCTATTAGCAAGACTATTTTCAATGGAAAGGATATGGTATTTGGTGGGAATCTTGATCGAGGATGGTGAAAACTTTCTTGATTAATAGATATAAGCCATTCACCAGGAGACTGAAAGTGAAATCTTCTTATAATGTTGAGA

Ace file of the UniGene biog2_v2.0_unigene10011

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene35462	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acetyl-CoA carboxylase, putative n=1 Tax=Ricinus communis RepID=B9SFG9_RICCO	-	-	4.0e-35	58%
FL-Next	sp=Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	53%
Blast2go	methylcrotonoyl- carboxylase subunit alpha	-	-	3.22046e-41	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Methylcrotonoyl-CoA carboxylase.	EC:6.4.1.4	-	3.22046e-41	69%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Valine, leucine and isoleucine degradation	00280		3.22046e-41	69%
Blast2go	Metabolic pathways	01100		3.22046e-41	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	leucine catabolic process	GO:0006552	Biological Process	3.22046e-41	69%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	3.22046e-41	69%
Blast2go	methylcrotonoyl-CoA carboxylase activity	GO:0004485	Molecular Function	3.22046e-41	69%
Blast2go	mitochondrion	GO:0005739	Cellular Component	3.22046e-41	69%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	3.22046e-41	69%

Source	InterPros	Term	Type	Identity
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	Biotin-binding site	IPR001882	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit, N-terminal	IPR005481	-	-
Sma3	Biotin carboxylase, C-terminal	IPR005482	-	-
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	Biotin carboxylation domain	IPR011764	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3		IPR013817	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q42777

Fln msg: your sequence is shorter than subject: 137 - 731

Fln protein: NNFKLHVDGVTMNVSLAVYSKDSVEHIHIWYGNCHHHFMRDIMKYHDEEDVQTKDKSDTFIPSVKGSVVAPMAGCVVKVLVEDGAMVKKGQSILVLEAMKMEHVVKAPYEGCVRKLQAVVGQQVFDNSSLFSIEDR*

Protein Length: 138

Fln nts: AACAACTTTAAATTACATGTTGATGGGGTTACCATGAATGTATCTTTGGCAGTCTATTCTAAGGACTCCGTTGAACATATACATATTTGGTATGGCAACTGTCACCATCATTTCATGCGAGATATAATGAAATATCATGATGAAGAGGATGTTCAAACTAAAGATAAGTCTGACACATTCATTCCAAGCGTTAAAGGATCAGTGGTTGCGCCAATGGCTGGATGCGTTGTGAAGGTTCTAGTAGAAGATGGGGCAATGGTAAAGAAGGGCCAATCTATTCTAGTTTTAGAAGCCATGAAAATGGAGCATGTAGTCAAAGCACCATATGAAGGTTGTGTTCGAAAGCTACAGGCTGTGGTTGGGCAGCAGGTGTTCGATAATTCTAGTCTTTTCAGTATTGAGGATAGATAA___TGCTATTAGCAAGACTATTTTCAATGGAAAGGATATGGTATTTGGTGGGAATCTTGATCGAGGATGGTGAAAACTTTCTTGATTAATAGATATAAGCCATTCACCAGGAGACTGAAAGTGAAATCTTCTTATAATGTTGAGA

Fln Alignment:

biogeco2_mira_c5942___NNFKLHVDGVTMNVSLAVYSKDSVEHIHIWYGNCHHHFMRDI-MKYHDEEDVQTKDKSDTFIPSVKGSVVAPMAGCVVKVLVEDGAMVKKGQSILVLEAMKMEHVVKAPYEGCVRKLQAVVGQQVFDNSSLFSIEDR
Q42777__________________NYFRVEAAGVINDVNVAVYSKDQIRHIHIWQGSCHHYFREKLGLELSEDEESQHKPKVETSA-NPQGTVVAPMAGLVVKVLVENKTRVEEGQPVLVLEAMKMEHVVKAPSSGYVHGLQLMVGEQVSDGSVLFSVKDQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain