SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10010

Length: 370 nt

UniGene Fasta

>biog2_v2.0_unigene10010
CTTACAGAAGTTTGAACGACGATATACATCTGTGTTGGCCTTTCGACCTACAGGGTGGACATACTCCAATAAAATTGGAAATGTGCTTGATTCTCTCAAGCCTGTATCCAAGAACAACATTACAATCTATGGAGTTCCATACAGTGAACATTCAAGCTTCTCAGAACTTCAAGAGTTTGTCCAGTTTCTGCGGCCAGAGAAGATTATTGCAACTGTAAATATTGGAAGTTCAGTTCACCGTGATCGTATGCAGTCGTATTTTCGACAGTGGTTAGCGAGATAAAGATGTATTCTTTATCTGTTTAAGCTAGTGCAACAAATGTCATGTATTTGTATTGAAGCAATTCTGCTAAATAGAAACTGAAATGAT

Ace file of the UniGene biog2_v2.0_unigene10010

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3639	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	DNA repair metallo-beta-lactamase n=1 Tax=Medicago truncatula RepID=Q2HRV5_MEDTR	-	-	63%
FL-Next	sp=DNA cross-link repair protein SNM1; Arabidopsis thaliana (Mouse-ear cress).	-	-	66%
Blast2go	dna cross-link repair protein snm1	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	0.0	76%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Sterile alpha motif domain	IPR001660	-	-
Sma3	DNA repair metallo-beta-lactamase	IPR011084	-	-
Sma3	Sterile alpha motif/pointed domain	IPR013761	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q38961

Fln msg: your sequence is shorter than subject: 94 - 484

Fln protein: LQKFERRYTSVLAFRPTGWTYSNKIGNVLDSLKPVSKNNITIYGVPYSEHSSFSELQEFVQFLRPEKIIATVNIGSSVHRDRMQSYFRQWLAR*

Protein Length: 95

Fln nts: CTTACAGAAGTTTGAACGACGATATACATCTGTGTTGGCCTTTCGACCTACAGGGTGGACATACTCCAATAAAATTGGAAATGTGCTTGATTCTCTCAAGCCTGTATCCAAGAACAACATTACAATCTATGGAGTTCCATACAGTGAACATTCAAGCTTCTCAGAACTTCAAGAGTTTGTCCAGTTTCTGCGGCCAGAGAAGATTATTGCAACTGTAAATATTGGAAGTTCAGTTCACCGTGATCGTATGCAGTCGTATTTTCGACAGTGGTTAGCGAGATAA___AGATGTATTCTTTATCTGTTTAAGCTAGTGCAACAAATGTCATGTATTTGTATTGAAGCAATTCTGCTAAATAGAAACTGAAATGAT

Fln Alignment:

biogeco2_mira_c5941___LQKFERRYTSVLAFRPTGWTYSNKIGNVLDSLKPVSKNNITIYGVPYSEHSSFSELQEFVQFLRPEKIIATVNIGSSVHRDRMQSYFRQWLAR
Q38961__________________LKIYREQYGAVLAFRPTGWTYSEKIGEHLDLIKPTSRGKITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNNGNAGTREKMQSCFREWLRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain