SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10006

Length: 188 nt

UniGene Fasta

>biog2_v2.0_unigene10006
CGTTACAGGATTTTTAGGTGGTGTAAATTGGGCATTGTTAGTTGCCCGGGTTTGTCAGCTTTATCCCAACGCGGTTCCTAGCATGTTGGTATCTCGTTTCTTTCGTGTTTATACTCAGTGGCGCTGGCCAAATCCTGTGATGCTTCGTTCAATAACAGAAGAGGAATTAGGATTTCCAGTTTGGGATC

Ace file of the UniGene biog2_v2.0_unigene10006

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4261	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative poly(A) polymerase [Oryza sativa Japonica Group]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	nuclear poly polymerase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polynucleotide adenylyltransferase.	EC:2.7.7.19	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	RNA polyadenylation	GO:0043631	Biological Process	81%
Blast2go	RNA binding	GO:0003723	Molecular Function	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	polynucleotide adenylyltransferase activity	GO:0004652	Molecular Function	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ25

Fln msg: Distance to subject end: 399 aas, your sequence is shorter than subject: 62 - 701

Fln protein: VTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLRSITEEELGFPVWD

Protein Length: 63

Fln nts: CGTTACAGGATTTTTAGGTGGTGTAAATTGGGCATTGTTAGTTGCCCGGGTTTGTCAGCTTTATCCCAACGCGGTTCCTAGCATGTTGGTATCTCGTTTCTTTCGTGTTTATACTCAGTGGCGCTGGCCAAATCCTGTGATGCTTCGTTCAATAACAGAAGAGGAATTAGGATTTCCAGTTTGGGATC

Fln Alignment:

biogeco2_mira_c5933___VTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLRSITEEELGFPVWD
C0PQ25__________________VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVFTQWRWPNPVMLRSIKEEELGFPVWD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
150		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain