SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9991

Length: 267 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9991
AACAGAGCGGAAATCCAGATGGACATCCAGTCATATTCTTTCATGGGGGACCTGGAGCTGGTACAAGTGGCCGCGATAGAAGATACTTCGATCCAGACTTTTTTCGTATCATTCTTTTCGATCAGCGTGGTGCAGGTAAAAGCAAGCCACATGCATGCTTAAAGGACAACACTACCTGGGATCTCATAAAAGATATTGAAAAAATAAGGAAGCACTTGAATATTGAGAAATGGCAGGTTTTTGGAGGCTCCTGGGGCAGTACTTTAG

Ace file of the UniGene biog2_v2.0_unigene9991 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10607	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Proline iminopeptidase (Fragment) n=2 Tax=Vitis vinifera RepID=D7T3J3_VITVI	-	-	71%
FL-Next	sp=Proline iminopeptidase; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	proline iminopeptidase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aminopeptidases.	EC:3.4.11.-	-	0.0	84%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	84%
Blast2go	proteolysis	GO:0006508	Biological Process	84%
Blast2go	copper ion binding	GO:0005507	Molecular Function	84%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	84%
Blast2go	aminopeptidase activity	GO:0004177	Molecular Function	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	84%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase S33	IPR002410	-	-
Sma3	Proline iminopeptidase	IPR005944	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P93732

Fln msg: Distance to subject end: 203 aas, your sequence is shorter than subject: 88 - 380

Fln protein: QSGNPDGHPVIFFHGGPGAGTSGRDRRYFDPDFFRIILFDQRGAGKSKPHACLKDNTTWDLIKDIEKIRKHLNIEKWQVFGGSWGSTL

Protein Length: 89

Fln nts: AACAGAGCGGAAATCCAGATGGACATCCAGTCATATTCTTTCATGGGGGACCTGGAGCTGGTACAAGTGGCCGCGATAGAAGATACTTCGATCCAGACTTTTTTCGTATCATTCTTTTCGATCAGCGTGGTGCAGGTAAAAGCAAGCCACATGCATGCTTAAAGGACAACACTACCTGGGATCTCATAAAAGATATTGAAAAAATAAGGAAGCACTTGAATATTGAGAAATGGCAGGTTTTTGGAGGCTCCTGGGGCAGTACTTTAG

Fln Alignment:

biogeco2_mira_c5910___QSGNPDGHPVIFFHGGPGAGTSGXXXXXXXXXXXRIILFDQRGAGKSKPHACLKDNTTWDLIKDIEKIRKHLNIEKWQVFGGSWGSTL
P93732_________________QSGKPDGHPVVFLHGGPGGGTAPSNRRFFDPEFYRIVLFDQRGAGKSTPHACLEENTTWDLVNDIEKLREHLKIPEWLVFGGSWGSTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain