SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9959

Length: 465 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9959
GTAATTGATCAGCATAGTTCACTAGCAGCCAATGGAAGCAAGGCATATGCAACTCCAGAGTACAAGTCAAATGTGGACAATGAAAGGAGTGCTTCATCATCTGAACATGAAAGTCAGTTCAGTGCACAAGAGGATGATGACGATAAGCGACCAAGTATTGCCCGAAGAATAACGATAGGAAATGGACCTCCTGAGTCGGTGCTCGATTGGACCAGGGAAATTGACTCAGGTTCTTACTATCAAAATAATCACGATCAAGGTTTCTCAAGAAAGCACTGGCGCCTGGTTCGGTGCCAAAATGGACTTCGGATCTTTGAAGAGCTTCTGGAGGCTGACTACTTGCCACAGAGCTGCAGCAGAGCTATGAAGGCAGTTGGTGTTGTGGATGCTCCTTGTGATGCGATTTTTAAGCTTGTCATGGGGATGGATGAAACTCGATATGAATGGGATTGCAGTTTTAACCAT

Ace file of the UniGene biog2_v2.0_unigene9959 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9059	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Lipid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S1J0_RICCO	-	-	67%
FL-Next	tr=Lipid binding protein, putative; Ricinus communis (Castor bean).	-	-	69%
Blast2go	enhanced disease resistance 2 protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	lipid binding	GO:0008289	Molecular Function	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Lipid-binding START	IPR002913	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF1336	IPR009769	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9S1J0

Fln msg: Distance to subject end: 465 aas, your sequence is shorter than subject: 155 - 727

Fln protein: VIDQHSSLAANGSKAYATPEYKSNVDNERSASSSEHESQFSAQEDDDDKRPSIARRITIGNGPPESVLDWTREIDSGSYYQNNHDQGFSRKHWRLVRCQNGLRIFEELLEADYLPQSCSRAMKAVGVVDAPCDAIFKLVMGMDETRYEWDCSFNH

Protein Length: 156

Fln nts: GTAATTGATCAGCATAGTTCACTAGCAGCCAATGGAAGCAAGGCATATGCAACTCCAGAGTACAAGTCAAATGTGGACAATGAAAGGAGTGCTTCATCATCTGAACATGAAAGTCAGTTCAGTGCACAAGAGGATGATGACGATAAGCGACCAAGTATTGCCCGAAGAATAACGATAGGAAATGGACCTCCTGAGTCGGTGCTCGATTGGACCAGGGAAATTGACTCAGGTTCTTACTATCAAAATAATCACGATCAAGGTTTCTCAAGAAAGCACTGGCGCCTGGTTCGGTGCCAAAATGGACTTCGGATCTTTGAAGAGCTTCTGGAGGCTGACTACTTGCCACAGAGCTGCAGCAGAGCTATGAAGGCAGTTGGTGTTGTGGATGCTCCTTGTGATGCGATTTTTAAGCTTGTCATGGGGATGGATGAAACTCGATATGAATGGGATTGCAGTTTTAACCAT

Fln Alignment:

biogeco2_mira_c5857___VIDQHS-SLAANGSKAYATPEYKSNVDNXXXXXXXXXXXXXXXXEDDDDKRPSIARRITIGNGPPESVLDWTREIDSGSYYQNNHDQGFSRKHWRLVRCQNGLRIFEELLEADYLPQSCSRAMKAVGVVDAPCDAIFKLVMGMDETRYEWDCSFNH
B9S1J0_________________VIDQHQESQVVNGNK-YISFEYKSGMDNGRTASSSDHESQFSAQEDEDDANPNLLRRTTIGNGPPDSVLDWTREVDSELSTQNANNQAFSRKHWRLLQCQNGLRIFEELVEVDYLPRSCSRAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain