SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9951

Length: 476 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9951
TTCTATATTCCTGAAGTATATCCTTCTCTGGAAAAGTGATCTTTCTGGATGATGATGTAGTAGTTCAGAAAGACTTGACACCACTTTTCTCTATAGACTTGCATGGGAATGTCAATGGGGCGGTTGAAACTTGCCTTGAGACATTTCACCGGTACCATAAATATCTCAATTTCTCCCACCCCATGATTCGTTCTCACTTTGATGCAGATGCTTGTGGATGGGCCTTTGGGATGAATGTGTTTGACCTTGTTACATGGAAGAAGCTCAATGTTACAAGCCGATATCACTATTGGCAAGAGCAGAATGTTGATAGGACACTTTGGAAACTTGGGACTTTGCCTCCAGGCTTGCTTACCTTCTATGGTCTCACTGAGCCACTTGATCGTCGTTGGCATATACTAGGCCTAGGTTATGATCCAAATGTGGACATGCAACTGATAGAAAGTGGAGCTGTTTTGCATTATAATGGGAACATG

Ace file of the UniGene biog2_v2.0_unigene9951 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3556	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase, CAZy family GT8 n=2 Tax=Selaginella moellendorffii RepID=D8RE39_SELML	-	-	72%
FL-Next	sp=Probable galacturonosyltransferase 11; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	cazy family gt8	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	80%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q949Q1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 32 aas, your sequence is shorter than subject: 158 - 537

Fln protein: LYS*SISFSGKVIFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSHPMIRSHFDADACGWAFGMNVFDLVTWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGYDPNVDMQLIESGAVLHYNGNM

Protein Length: 159

Fln nts: TTCTATATTCCTGAAGTATATCCTTCTCTGGAAAAGTGATCTTTCTGGATGATGATGTAGTAGTTCAGAAAGACTTGACACCACTTTTCTCTATAGACTTGCATGGGAATGTCAATGGGGCGGTTGAAACTTGCCTTGAGACATTTCACCGGTACCATAAATATCTCAATTTCTCCCACCCCATGATTCGTTCTCACTTTGATGCAGATGCTTGTGGATGGGCCTTTGGGATGAATGTGTTTGACCTTGTTACATGGAAGAAGCTCAATGTTACAAGCCGATATCACTATTGGCAAGAGCAGAATGTTGATAGGACACTTTGGAAACTTGGGACTTTGCCTCCAGGCTTGCTTACCTTCTATGGTCTCACTGAGCCACTTGATCGTCGTTGGCATATACTAGGCCTAGGTTATGATCCAAATGTGGACATGCAACTGATAGAAAGTGGAGCTGTTTTGCATTATAATGGGAACATG

Fln Alignment:

biogeco2_mira_c5838___KVIFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSHPMIRSHFDADACGWAFGMNVFDLVTWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGYDPNVDMQLIESGAVLHYNGNM
Q949Q1_________________KIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPLISSKFDPQACGWAFGMNVFDLIAWRNANVTARYHYWQDQNRERTLWKLGTLPPGLLSFYGLTEPLDRRWHVLGLGYDVNIDNRLIETAAVIHYNGNM

SNPs (tot: 3)

Position	A %	C %	T %	Probability
352		33	66	0.997452
354	66	33		0.997452
356		66	33	0.997454

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain