SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9941

Length: 228 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9941
GTCTGCATTTTTCTTCAACTATATCAAGCTATCTCCCGGAGAAGCGCTTTATCTGGATGCAAATGAACCACATGCCTATTTGTGTGGGGAATGTGTTGAATGCATGGCTACATCAGATAATGTTGTGCGGGCTGGTTTAACCCCAAAGTATCGTGATGTTGAAACTCTTTGCTCAATGCTAACGTACAAACAGGGCTTGCCAGAAATTTTGGAAGGAGTACCTGTGGA

Ace file of the UniGene biog2_v2.0_unigene9941 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21290	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Mannose-6-phosphate isomerase n=1 Tax=Picea sitchensis RepID=B8LLA2_PICSI	-	-	91%
FL-Next	sp=Mannose-6-phosphate isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	mannose-6-phosphate isomerase-like	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Mannose-6-phosphate isomerase, type I	IPR001250	-	-
Sma3	Mannose-6-phosphate isomerase	IPR016305	-	-
Sma3	Phosphomannose isomerase, type I, conserved site	IPR018050	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLA2

Fln msg: Distance to subject end: 102 aas, your sequence is shorter than subject: 75 - 432

Fln protein: SAFFFNYIKLSPGEALYLDANEPHAYLCGECVECMATSDNVVRAGLTPKYRDVETLCSMLTYKQGLPEILEGVPV

Protein Length: 76

Fln nts: GTCTGCATTTTTCTTCAACTATATCAAGCTATCTCCCGGAGAAGCGCTTTATCTGGATGCAAATGAACCACATGCCTATTTGTGTGGGGAATGTGTTGAATGCATGGCTACATCAGATAATGTTGTGCGGGCTGGTTTAACCCCAAAGTATCGTGATGTTGAAACTCTTTGCTCAATGCTAACGTACAAACAGGGCTTGCCAGAAATTTTGGAAGGAGTACCTGTGGA

Fln Alignment:

biogeco2_mira_c5823___SAFFFNYIKLSPGEALYLDANEPHAYLCGECVECMATSDNVVRAGLTPKYRDVETLCSMLTYKQGLPEILEGVPV
B8LLA2_________________SAFFFNYIKLAPGEALYLDANEPHAYLYGECVECMATSDNVVRAGLTPKYRDVKTLCSMLTYKQGLPEILEGVPV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
145	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain