SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9903

Length: 253 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9903
TGATTCGGAGATAGATATTCGTGCATCAGCAGGGCCTATTCTTGGCCCACCTTGGCAGCGCCCTGAGAACGGGTACTTTATAGAAGCACAGGATCCAAAATTTATACTATACTATGAGCCTCATTGTGTATATAACAAATCTCTATTAGAAGGAGAACATGCTGATGTCATCATAACGCCTGTTATCAAACAGTTACTTCCTGCATTCACTCTTGTCTCTGGACAGGAGGATGCAGTTGACTTGGCACAATTA

Ace file of the UniGene biog2_v2.0_unigene9903 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene407	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	metallo-beta-lactamase domain-containing protein [Arabidopsis thaliana] gb\|AAG50777.1\|AC079288_6 unknown protein [Arabidopsis thaliana] gb\|AAG51727.1\|AC068667_6 unknown protein; 129333-127623 [Arabidopsis thaliana] gb\|AAK68769.1\| Unknown protein [Arabidop	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	metallo-beta-lactamase domain-containing protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	75%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQQ5

Fln msg: Distance to subject end: 69 aas, your sequence is shorter than subject: 84 - 369

Fln protein: DSEIDIRASAGPILGPPWQRPENGYFIEAQDPKFILYYEPHCVYNKSLLEGEHADVIITPVIKQLLPAFTLVSGQEDAVDLAQL

Protein Length: 85

Fln nts: TGATTCGGAGATAGATATTCGTGCATCAGCAGGGCCTATTCTTGGCCCACCTTGGCAGCGCCCTGAGAACGGGTACTTTATAGAAGCACAGGATCCAAAATTTATACTATACTATGAGCCTCATTGTGTATATAACAAATCTCTATTAGAAGGAGAACATGCTGATGTCATCATAACGCCTGTTATCAAACAGTTACTTCCTGCATTCACTCTTGTCTCTGGACAGGAGGATGCAGTTGACTTGGCACAATTA

Fln Alignment:

biogeco2_mira_c5747___SEIDIRASAGPILGPPWQRPENG-------------------------------------YFIEAQDPKFILYYEPHCVYNKSLLEGEHADVIITPVIKQLLPAFTLVSGQEDAVDLAQL
A9NQQ5_________________SEIDIRASAGPILGPPWQRPENGTISKVSLADITGQRHIFEVFAVQSTREASRLTFLKLGYFIEAHDPKFILYYEPHCVYNKSLLEGQHADVIITPVIKQLLPAFTLVSGQEDAVELARL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
62			33	66	0.997456

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain