SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9857

Length: 950 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene9857 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27348	6/27
SustainPine v2.0	sp_v2.0_unigene60318	21/27

Source	Descriptions	Term	Type	Identity
AutoFact	Translation initiation factor n=4 Tax=Magnoliophyta RepID=B5M1Y2_RHEAU	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	protein	-	-	97%

Source	InterPros	Term	Type	Identity
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	RNA-binding domain, S1, IF1 type	IPR006196	-	-
Sma3	Translation initiation factor 1A (eIF-1A)	IPR001253	-	-
Sma3	Translation initiation factor 1A (eIF-1A), conserved site	IPR018104	-	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
96	75	25			0.996473
133		33		66	1.0
189	83		16		0.994512
235	16		83		0.994512
251		16		83	0.994512
325		12		87	0.992554
326		12	87		0.992554
328			87	12	0.992554
446		10		90	0.90298
677		10		90	0.90298
858	66		33		0.997476
894		33	66		0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain