SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9800

Length: 279 nt

UniGene Fasta

>biog2_v2.0_unigene9800
ATGGGGGGATCTCAGGGCATGGTAGCCGGCCAGTATATGGATCTCGGGAGCACAGGTAATAACAAATTTGACCCTTCCCTTGTGGGGTTTATTCATGAGCGGAAATTTGGGATCATGGCAGAGTGTTCAGCTGTGACTGGAGGAATTATAGGTGGTGCAACAGATGAGGACGTGGAGAGGCTGCGGAATTATGGCAGATCTGTGGGTGTTCTGTACCAAATTGCGGATGATATACTTGAGGAGGAAGCCTTGCTGGAAGGGAATGGTGGAGCCATCAAG

Ace file of the UniGene biog2_v2.0_unigene9800

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15700	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	geranylgeranyl diphosphate synthase, type II [Arabidopsis thaliana] sp\|Q39108.2\|GGR_ARATH RecName: Full=Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic; Flags: Precursor gb\|AAG41488.1\|AF326906_1 putative geranylgeranyl pyrophosphate s	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	geranylgeranyl diphosphate synthase	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Farnesyltranstransferase.	EC:2.5.1.29	-	0.0	72%

Source	KEGGs	Term	Identity
Blast2go	Terpenoid backbone biosynthesis	00900	72%
Blast2go	Biosynthesis of terpenoids and steroids	01062	72%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	72%
Blast2go	Biosynthesis of plant hormones	01070	72%
Blast2go	Metabolic pathways	01100	72%
Blast2go	Biosynthesis of secondary metabolites	01110	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	farnesyltranstransferase activity	GO:0004311	Molecular Function	0.0	72%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQN3

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 93 - 369

Fln protein: MGGSQGMVAGQYMDLGSTGNNKFDPSLVGFIHERKFGIMAECSAVTGGIIGGATDEDVERLRNYGRSVGVLYQIADDILEEEALLEGNGGAIK

Protein Length: 94

Fln nts: ATGGGGGGATCTCAGGGCATGGTAGCCGGCCAGTATATGGATCTCGGGAGCACAGGTAATAACAAATTTGACCCTTCCCTTGTGGGGTTTATTCATGAGCGGAAATTTGGGATCATGGCAGAGTGTTCAGCTGTGACTGGAGGAATTATAGGTGGTGCAACAGATGAGGACGTGGAGAGGCTGCGGAATTATGGCAGATCTGTGGGTGTTCTGTACCAAATTGCGGATGATATACTTGAGGAGGAAGCCTTGCTGGAAGGGAATGGTGGAGCCATCAAG

Fln Alignment:

biogeco2_mira_c5589___GSQGMVAGQYMDLGSTGNNKFDPSLVGFIHERKFGIMAECSAVTGGIIGGATDEDVERLRNYGRSVGVLYQ
C0PQN3_________________GSQGMVVGQYMDLGSTGNNKFDPSLVEFIHERKFGIMAECSAVTGGIIGGATDEEVERLRNYGRSVGVLYQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain