SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9776

Length: 428 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9776
CACGTGGCCTTAACTACTTTCGGATGATAAATACAGAGGCAGAACAACTTCATTCGGCCAAGAAACCAAAGGCGTGTAAACGAGTTGGTACCCACAATGGCTCCTTTCATTGCGACGAGGCGCTTGCCTGCTACATGATTCGTCTCACAGACAAGTTCAAAGACGCAGACATTGTACGCAGTCGAGATCCCAAGGTCTTGGGAACTCTGGATGCAGTATTAGACGTGGGTGGTGTTTATGACTCCACAAAGGATTGGTATGATCACCATCAGAAAGGCTTTAATCAAGACTTTGGACATGGTTTCAGAACAAAGCTGAGTACTGCTGGCCTTGTGTACAAGCATTATGGAAGGGAAATAGTATCCAGGTATCTTGGTTTGGATGCAAACCATTCTGACGTTGAGCGAGTCTATCTTGCGCTATACAAA

Ace file of the UniGene biog2_v2.0_unigene9776 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1400	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	[S] COG4286 Uncharacterized conserved protein related to MYG1 family	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Metal-dependent protein hydrolase	IPR003226	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NN41

Fln msg: Distance to subject end: 205 aas, your sequence is shorter than subject: 142 - 383

Fln protein: RGLNYFRMINTEAEQLHSAKKPKACKRVGTHNGSFHCDEALACYMIRLTDKFKDADIVRSRDPKVLGTLDAVLDVGGVYDSTKDWYDHHQKGFNQDFGHGFRTKLSTAGLVYKHYGREIVSRYLGLDANHSDVERVYLALYK

Protein Length: 143

Fln nts: CACGTGGCCTTAACTACTTTCGGATGATAAATACAGAGGCAGAACAACTTCATTCGGCCAAGAAACCAAAGGCGTGTAAACGAGTTGGTACCCACAATGGCTCCTTTCATTGCGACGAGGCGCTTGCCTGCTACATGATTCGTCTCACAGACAAGTTCAAAGACGCAGACATTGTACGCAGTCGAGATCCCAAGGTCTTGGGAACTCTGGATGCAGTATTAGACGTGGGTGGTGTTTATGACTCCACAAAGGATTGGTATGATCACCATCAGAAAGGCTTTAATCAAGACTTTGGACATGGTTTCAGAACAAAGCTGAGTACTGCTGGCCTTGTGTACAAGCATTATGGAAGGGAAATAGTATCCAGGTATCTTGGTTTGGATGCAAACCATTCTGACGTTGAGCGAGTCTATCTTGCGCTATACAAA

Fln Alignment:

biogeco2_mira_c5558___KACKRVGTHNGSFHCDEALACYMIRLTDKFKDADIVRSRDPKVLGTLDAVLDVGGVYDSTKDWYDHHQKGFNQDFGHGFRTKLSTAGLVYKHYGREIVSRYLGLDANHSDVERVYLALYK
A9NN41_________________KTLKRIGTHNGTFHCDEALGCFMIRLTHKFAGAQIVRTRDPQVLETMDAVLDVGGVYDPSKDRYDHHQRGFGAVFGHGFVTKLSSAGLIYKHFGLEIISREIGRDPGHPDVERMYLAVYK

SNPs (tot: 4)

Position	A %	C %	G %	Probability
267		66	33	0.997453
284	66		33	0.997452
374		33	66	0.997452
375	66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain