SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9764

Length: 520 nt

UniGene Fasta

>biog2_v2.0_unigene9764
AATAGGGGAACAGGATTTGCTGGTCAGTCCACCCTTCCAGAGCACAATTCCCTTATTAGCACTCGTATTCTGTACATATGGTGGTTGCTTCAACGCGTTCGATGCTTCGTTCCAATCTGTTTGACAGTACAATGGCAGAAGAAAGGATCCATTTTGGAATACTGGGCTGTGCAAACATAGCCAGAAAGAATTCTAGAGCAATTAATATGTCACCCAATTCATTAATTCATGCAATTGGCTCCAGATCTCTGGAGAAGGCCGCGGCCTTGCTTCTGCTAATAATTTGTCTTTAGAAGTGAAGTTGTATGGCAGCTACGATGAGGTTTTGGATGACCCAGCTGTGGATGCTGTGTACATTCCTCTGCCCACCAGTTTACATCTTGATGGGCTCTCAAGTCTGCCCAGAAAAAGAACACATCCTTCTTGAGAAGCCCCCTGCCTTGTCTGTACAGGATCTGGACATCATCATTGAGGCCTGTGACACAAATGGTGTTCAACTTATGGATGGCACCATGTGGAG

Ace file of the UniGene biog2_v2.0_unigene9764

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene577	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01408, GFO_IDH_MocA, Oxidoreductase family, NAD-binding Rossmann fold	-	-	6.0e-26	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	uncharacterized oxidoreductase at4g09670-like	-	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	74%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	74%
Blast2go	binding	GO:0005488	Molecular Function	74%

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, N-terminal	IPR000683	-	-
Sma3	Oxidoreductase, C-terminal	IPR004104	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZF1

Fln msg: Distance to subject end: 238 aas, your sequence is shorter than subject: 147 - 369

Fln protein: MVVASTRSMLRSNLFDSTMAEERIHFGILGCANIARKNSRAINMSPNSLIHAIGSRSLEKAAALLLLIICL*K*SCMAATMRFWMTQLWMLCTFLCPPVYILMGSQVCPEKEHILLEKPPALSVQDLDIIIEACDTNGVQLMDGTMW

Protein Length: 148

Fln nts: AATAGGGGAACAGGATTTGCTGGTCAGTCCACCCTTCCAGAGCACAATTCCCTTATTAGCACTCGTATTCTGTACAT_-_ATGGTGGTTGCTTCAACGCGTTCGATGCTTCGTTCCAATCTGTTTGACAGTACAATGGCAGAAGAAAGGATCCATTTTGGAATACTGGGCTGTGCAAACATAGCCAGAAAGAATTCTAGAGCAATTAATATGTCACCCAATTCATTAATTCATGCAATTGGCTCCAGATCTCTGGAGAAGGCCGCGGCCTTGCTTCTGCTAATAATTTGTCTTTAGAAGTGAAGTTGTATGGCAGCTACGATGAGGTTTTGGATGACCCAGCTGTGGATGCTGTGTACATTCCTCTGCCCACCAGTTTACATCTTGATGGGCTCTCAAGTCTGCCCAGAAAAAGAACACATCCTTCTTGAGAAGCCCCCTGCCTTGTCTGTACAGGATCTGGACATCATCATTGAGGCCTGTGACACAAATGGTGTTCAACTTATGGATGGCACCATGTGGAG

Fln Alignment:

biogeco2_mira_c5537___MAEERIHFGILGCANIARKNSRAINMSPNSLIHAIGSRXXXXXXXXXXXXXXXXXXXXMAATMRFWMTQLWMLCTFLCPPVYILMGSQVCPE--------KEHILLEKPPALSVQDLDIIIEACDTNGVQLMDGTMW
A9NZF1_________________MAEESVRFGILGCANIANKLSRAINLAPNSTLHAISSRSLEKATAFASTNN-------LSPEVKLYGSYDEVLDDPSVDAVYIPLPTSLHLEWALKSVQKKKHILLEKPPALSVEELDKIIEACNANGLQLMDCTMW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain