SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9753

Length: 379 nt

UniGene Fasta

>biog2_v2.0_unigene9753
ATGGGGAAATGAGCCAGGTTCGCAATGTAATGGTGGAGAATATTGACAAAGTACTCGAGAGAGGTGACAGATTAGAGTTGCTGGTAGATAAGACTGAAACGATACAAGGGAACACTTTCAAATTTAAGAAGCAAGCTCGTCGTTTCAAAAATACAATGTGGTGGAGAAACATCAAACTCACGGTCGCAGTGATAGTCGTGCTTTTGATCGTCATCTATGTCATCCTCGCTATAGTTTGCAAAGGTGTTACCCTACCGTCCTGCAGAAAGTGAATCGAACCGTTTGAATGTGTGGTCAGTGTCGTGTGTATTTTTAGAAGGCACAAAGGTTTTTATTTTGGGAGGCAATTGGTTAATACATATAAAGGGTGGTAAAGCGC

Ace file of the UniGene biog2_v2.0_unigene9753

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22783	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	vesicle-associated membrane protein 711 [Arabidopsis thaliana] sp\|O49377.2\|VA711_ARATH RecName: Full=Vesicle-associated membrane protein 711; Short=AtVAMP711; AltName: Full=v-SNARE synaptobrevin 7C; Short=AtVAMP7C gb\|AAL27509.1\|AF439840_1 AT4g32150/F10N7_	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	vesicle-associated membrane protein 7c	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	stomatal movement	GO:0010118	Biological Process	88%
Blast2go	transport	GO:0006810	Biological Process	88%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	88%
Blast2go	response to salt stress	GO:0009651	Biological Process	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Longin	IPR010908	-	0.0	-
Sma3	Synaptobrevin	IPR001388	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2K7

Fln msg: your sequence is shorter than subject: 90 - 219

Fln protein: GEMSQVRNVMVENIDKVLERGDRLELLVDKTETIQGNTFKFKKQARRFKNTMWWRNIKLTVAVIVVLLIVIYVILAIVCKGVTLPSCRK*

Protein Length: 91

Fln nts: ATGGGGAAATGAGCCAGGTTCGCAATGTAATGGTGGAGAATATTGACAAAGTACTCGAGAGAGGTGACAGATTAGAGTTGCTGGTAGATAAGACTGAAACGATACAAGGGAACACTTTCAAATTTAAGAAGCAAGCTCGTCGTTTCAAAAATACAATGTGGTGGAGAAACATCAAACTCACGGTCGCAGTGATAGTCGTGCTTTTGATCGTCATCTATGTCATCCTCGCTATAGTTTGCAAAGGTGTTACCCTACCGTCCTGCAGAAAGTGA___ATCGAACCGTTTGAATGTGTGGTCAGTGTCGTGTGTATTTTTAGAAGGCACAAAGGTTTTTATTTTGGGAGGCAATTGGTTAATACATATAAAGGGTGGTAAAGCGC

Fln Alignment:

biogeco2_mira_c5524___EMSQVRNVMVENIDKVLERGDRLELLVDKTETIQGNTFKFKKQARRFKNTMWWRNIKLTXXXXXXXXXXXXXXXXXXCKG
A9P2K7_________________QVSEVKGIMMDNIEKVLDRGEKIELLVDKTEGLQFQADNFQRQGRQLRRKMWLQNLKFKIIVLGTVLSIILIIWLSVCKG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
125	33			66	0.997464
127	66		33		0.997453
128	66		33		0.997452
191		25		75	0.996473
253	33	66			0.997459
328	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain