SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9751

Length: 568 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9751
GTCTAGCTACACTGATTCCTTAAAGTTTATACTTGATGACGATGGAGAAGATTCGAATTCCAGCGAGTATCATGTCAACTGGAAGCCTTTGGCTGGAAATCAGCAGAATTTCGTCAGCTTGGGAACCGGGGAATTTCGAGAAGATGACAAACCAGTCGTGCAACAGGCAGATCCAGAGGGCAGTCTAGGGTACGATTCTTCGATGCTAAATAGTAACGTCGAGTTCTGGAGACATGAGCTATCTCTGTGGCCAGCAACAGAAAGTAACACAATGGGAGAACCAGCTGTGGCCTACTCATCCTCGAATTGCGCAGCACCGCCTGTGACCGGGCAGCACAAAAAAGTAAAACTGGAACCCTCGGGTACCAATTTCTCCGTGGAGCAATTTCTTGAGCTTGCAGATCATACCATGGGCACAAACATGGAATGCAAAAGCAGTATTTATGATCGTTGGCCAGACATGAACTTGGCAGATCAGGATCAGGGGATGGAGTACTGGGTCAACCTTCTTAGGCAAGTTGGTCCATTGCCATTCCTCGAGACTATAGCTCCACCTGACCTTTAGCCC

Ace file of the UniGene biog2_v2.0_unigene9751 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11509	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	R2R3-MYB transcription factor MYB11 [Picea glauca]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	83%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	83%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	83%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	83%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	83%
Blast2go	response to salt stress	GO:0009651	Biological Process	83%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	83%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	83%
Blast2go	DNA binding	GO:0003677	Molecular Function	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPW4

Fln msg: your sequence is shorter than subject: 188 - 265

Fln protein: SSYTDSLKFILDDDGEDSNSSEYHVNWKPLAGNQQNFVSLGTGEFREDDKPVVQQADPEGSLGYDSSMLNSNVEFWRHELSLWPATESNTMGEPAVAYSSSNCAAPPVTGQHKKVKLEPSGTNFSVEQFLELADHTMGTNMECKSSIYDRWPDMNLADQDQGMEYWVNLLRQVGPLPFLETIAPPDL*

Protein Length: 189

Fln nts: GTCTAGCTACACTGATTCCTTAAAGTTTATACTTGATGACGATGGAGAAGATTCGAATTCCAGCGAGTATCATGTCAACTGGAAGCCTTTGGCTGGAAATCAGCAGAATTTCGTCAGCTTGGGAACCGGGGAATTTCGAGAAGATGACAAACCAGTCGTGCAACAGGCAGATCCAGAGGGCAGTCTAGGGTACGATTCTTCGATGCTAAATAGTAACGTCGAGTTCTGGAGACATGAGCTATCTCTGTGGCCAGCAACAGAAAGTAACACAATGGGAGAACCAGCTGTGGCCTACTCATCCTCGAATTGCGCAGCACCGCCTGTGACCGGGCAGCACAAAAAAGTAAAACTGGAACCCTCGGGTACCAATTTCTCCGTGGAGCAATTTCTTGAGCTTGCAGATCATACCATGGGCACAAACATGGAATGCAAAAGCAGTATTTATGATCGTTGGCCAGACATGAACTTGGCAGATCAGGATCAGGGGATGGAGTACTGGGTCAACCTTCTTAGGCAAGTTGGTCCATTGCCATTCCTCGAGACTATAGCTCCACCTGACCTTTAG___CCC

Fln Alignment:

biogeco2_mira_c5522___SSYTDSLKFILDDDGEDSNSSEYHVNWKPLAGNQQNFVSLGTGEFREDDKPVVQQADPEGSLGYDSSMLNSNVEFWRHELSLWPATESNTMGEPAVAYSSSNCAAPPVTGQHKKVKLEPSGTNFSVEQFLELADHTMGTNMECKSSIYDRWPDMNLADQDQGMEYWVNLLRQVGPLPFLETIAPPDL
B8LPW4_________________SSYTDSLKFILDDDGEDSNSSEYQVNWKPSAGNQQNFVSLGCGEFQDDDNAVVQQADPEGSLAYDSSMLNSNVEFWRHELSLWPTTENNTLGEQVLAYSSSNGAAAAVSGQQKKVKLEPSGTNFSVEQFLELADHSMGTNMEGKSNIYDRWPDMNLADQDQGMEYWVNLLRQVGPLPFLETISPPDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain