SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9730

Length: 463 nt

UniGene Fasta

>biog2_v2.0_unigene9730
GGAAGTTATTGCGAGAAGTAAAGCAGAAATTGACTCTTCACCTCTAACATGTCCAGTTATAGCCCATGCTGGTGATGGGAATTTCCACACTATAATATTATTTAATCCTGAGATAGAAGAACATAGACAAGAAGCGGAACGCTTGAATAATTTTATGGTCAATGCTGCATTATTGTTGGAAGGTACCTGCACTGGCGAGCACGGTGTAGGAACGGGTAAAATGAAGTATCTTGAAAAGGAGCTAGGTAGTGAGGCACTGAAAACAATGGCGATGATAAAGAATGCAGTGGATCCCAACAATATTATGAACCCGGGAAAGCTTATCCCTCCTCATGTTTGTTCTAAAAGAATGTATAAATTGAAATCAAATTAAGGATAATAGATAAGTGTTTCATTTGGTAACAGTGCTCACGGATTAGATCCAAAGACATCTTGATCTGAGTATATGATATTGTACAGCGCC

Ace file of the UniGene biog2_v2.0_unigene9730

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene212	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	D-lactate dehydrogenase [cytochrome] [Arabidopsis thaliana] sp\|Q94AX4.1\|DLD_ARATH RecName: Full=D-lactate dehydrogenase [cytochrome], mitochondrial; Short=AtD-LDH; AltName: Full=D-lactate ferricytochrome C oxidoreductase; AltName: Full=Glycolate deshydrog	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	d-lactate dehydrogenase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	D-lactate dehydrogenase (cytochrome).	EC:1.1.2.4	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyruvate metabolism	00620		0.0	82%
Blast2go	Glycolate dehydrogenase.	EC:1.1.99.14	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glyoxylate and dicarboxylate metabolism	00630		0.0	82%
Blast2go	Metabolic pathways	01100		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	methylglyoxal catabolic process	GO:0051596	Biological Process	82%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	82%
Blast2go	identical protein binding	GO:0042802	Molecular Function	82%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	82%
Blast2go	glycolate oxidase activity	GO:0008891	Molecular Function	82%
Blast2go	D-lactate dehydrogenase (cytochrome) activity	GO:0004458	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	glycolate dehydrogenase activity	GO:0019154	Molecular Function	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-binding, type 2, subdomain 1	IPR016167	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-
Sma3	FAD-linked oxidase, C-terminal	IPR004113	-	-
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWI6

Fln msg: your sequence is shorter than subject: 124 - 580

Fln protein: EVIARSKAEIDSSPLTCPVIAHAGDGNFHTIILFNPEIEEHRQEAERLNNFMVNAALLLEGTCTGEHGVGTGKMKYLEKELGSEALKTMAMIKNAVDPNNIMNPGKLIPPHVCSKRMYKLKSN*

Protein Length: 125

Fln nts: GGAAGTTATTGCGAGAAGTAAAGCAGAAATTGACTCTTCACCTCTAACATGTCCAGTTATAGCCCATGCTGGTGATGGGAATTTCCACACTATAATATTATTTAATCCTGAGATAGAAGAACATAGACAAGAAGCGGAACGCTTGAATAATTTTATGGTCAATGCTGCATTATTGTTGGAAGGTACCTGCACTGGCGAGCACGGTGTAGGAACGGGTAAAATGAAGTATCTTGAAAAGGAGCTAGGTAGTGAGGCACTGAAAACAATGGCGATGATAAAGAATGCAGTGGATCCCAACAATATTATGAACCCGGGAAAGCTTATCCCTCCTCATGTTTGTTCTAAAAGAATGTATAAATTGAAATCAAATTAA___GGATAATAGATAAGTGTTTCATTTGGTAACAGTGCTCACGGATTAGATCCAAAGACATCTTGATCTGAGTATATGATATTGTACAGCGCC

Fln Alignment:

biogeco2_mira_c5484___EVIARSKAEIDSSPLTCPVIAHAGDGNFHTIILFNPEIEEHRQEAERLNNFMVNAALLLEGTCTGEHGVGTGKMKYLEKELGSEALKTMAMIKNAVDPNNIMNPGKLIPPHVC
A9NWI6_________________EVIARSKAEIDSSPLTCPVIAHAGDGNFHTVILFNPEKEEHRQEAERLNNFMVHAALLMEGTCSGEHGVGTGKMKYLEKELGIEALRTMALIKHAVDPNNIMNPGKLIPPHVC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain