SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9717

Length: 405 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9717
TAAGATGGAAGGAGAATCGTTAGATCTGAAACCTGTTGAAATTACCCAAGAAGAACCCAAGAAAGGAGGATCCAGCAAAGAGGAACCCAACGACGGTGAAGAGGAAGATGACGAGGAGAAGGCAAACACAAAATCCTTAGAGCGAAAACAACCTGCTTTTGTGAAGACATTCCAGCAACTCTCTAATGCCCAGAATGCCTTTACGGGAATATCGGGAACTGGTTTTTCCTTCTCCAGCTTCTCCTTTGATACTAAAATAACACCATTTGGATCAACCCCAAAGTTTGGCTCGTTTAACTTTAGCTCAGCATCCGCTTTTGGTTCTCTATCAAGTACAGGGTCACTGACTGGCACAGGATCCTTGTTTGGGACAAAACTAGTCACTGATGATTCAGCTCCAATTGA

Ace file of the UniGene biog2_v2.0_unigene9717 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene921	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleoporin 50 protein [Arabidopsis thaliana] gb\|AAG51549.1\|AC037424_14 unknown protein; 23094-21772 [Arabidopsis thaliana] gb\|AAK59765.1\| At1g52380/F19K6_4 [Arabidopsis thaliana] gb\|AAL15374.1\| At1g52380/F19K6_4 [Arabidopsis thaliana] gb\|AEE32797.1\| nucl	-	-	7.0e-36	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	ran-binding protein 1 domain-containing protein	-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	intracellular transport	GO:0046907	Biological Process	71%
Blast2go	protein binding	GO:0005515	Molecular Function	71%
Blast2go	nuclear pore	GO:0005643	Cellular Component	71%
Blast2go	cytosol	GO:0005829	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Nuclear pore complex, NUP2/50/61	IPR015007	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Ran binding domain	IPR000156	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV26

Fln msg: Distance to subject end: 159 aas, your sequence is shorter than subject: 134 - 438

Fln protein: KMEGESLDLKPVEITQEEPKKGGSSKEEPNDGEEEDDEEKANTKSLERKQPAFVKTFQQLSNAQNAFTGISGTGFSFSSFSFDTKITPFGSTPKFGSFNFSSASAFGSLSSTGSLTGTGSLFGTKLVTDDSAPI

Protein Length: 135

Fln nts: TAAGATGGAAGGAGAATCGTTAGATCTGAAACCTGTTGAAATTACCCAAGAAGAACCCAAGAAAGGAGGATCCAGCAAAGAGGAACCCAACGACGGTGAAGAGGAAGATGACGAGGAGAAGGCAAACACAAAATCCTTAGAGCGAAAACAACCTGCTTTTGTGAAGACATTCCAGCAACTCTCTAATGCCCAGAATGCCTTTACGGGAATATCGGGAACTGGTTTTTCCTTCTCCAGCTTCTCCTTTGATACTAAAATAACACCATTTGGATCAACCCCAAAGTTTGGCTCGTTTAACTTTAGCTCAGCATCCGCTTTTGGTTCTCTATCAAGTACAGGGTCACTGACTGGCACAGGATCCTTGTTTGGGACAAAACTAGTCACTGATGATTCAGCTCCAATTGA

Fln Alignment:

biogeco2_mira_c5453___KMEGESLDLKPVEITQXXXXXXXXXXXXXXXXXXXXXXEKANTKSLERKQPAFVKTFQQLSNAQNAXXXXXXXXXXXXXXXXXTKITPFGSTPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLVTDDSAP
A9NV26_________________KLERESSDLKHVEITEGEPNKEESSKEEPNEGEEEDDEEKPNTKSLERKQPAFVKTFQQLSNAQNAFTGIAGTGFSFSSFSFDTKITPYGSTPKFGSFNYSSASAFGGLSSTGSLAGTGSLFGTKLVSDDSAP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain