SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9707

Length: 522 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9707
ATGGGGAAACGTATCCTGAACTGCCAGGCTGGTGTGATGCTGACTGTATAAATTTGGGGATCATTCGGTTGGGTTTTTGTATCAGTCAGCCATCAGTCTATCTCTCTGCCTGAATTCAGAGTTATGGGGAAGACGCGCGAAGAATTTGACTGTTTTTCCTGGCTCGGGCACAACTCTAAGTCAAGAGTTGTGAACACTGACTTGGACCCCGTTCTGCTGGTCCCTGGAATTGGCGGTTCCATTCTGGATGCAGTCAATAAGAAGGATGGAAGCTCTGAACGGGTGTGGGTGCGGATACTTATGGCTTCTTGTGAGTTCAAGAAGAAGCTCTGGGCTGTCTACAATCCTGAGACAGGGTATGCAGAGCCTTTGGATCCCAATATTAAAATTGAAGTGCCAGATGATGACTATGGTCTTTATGCAATTGACATGTTGGATCCTTCATGGCTACCAAAACTTCTCCACATTAAGGAATTGTACTATTTTCATGATCTGATTGATACACTACTTGACTGGGGTTAC

Ace file of the UniGene biog2_v2.0_unigene9707 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9961	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Phospholipase A(1) LCAT3 n=2 Tax=Arabidopsis RepID=LCAT3_ARATH	-	-	60%
FL-Next	sp=Phospholipase A(1) LCAT3; Arabidopsis thaliana (Mouse-ear cress).	-	-	55%
Blast2go	protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphatidylcholine--sterol O-acyltransferase.	EC:2.3.1.43	-	0.0	73%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerophospholipid metabolism	00564		0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	73%
Blast2go	phosphatidylcholine-sterol O-acyltransferase activity	GO:0004607	Molecular Function	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase	IPR003386	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q93V61

Fln msg: Distance to subject end: 318 aas, your sequence is shorter than subject: 133 - 447

Fln protein: MGKTREEFDCFSWLGHNSKSRVVNTDLDPVLLVPGIGGSILDAVNKKDGSSERVWVRILMASCEFKKKLWAVYNPETGYAEPLDPNIKIEVPDDDYGLYAIDMLDPSWLPKLLHIKELYYFHDLIDTLLDWGY

Protein Length: 134

Fln nts: ATGGGGAAACGTATCCTGAACTGCCAGGCTGGTGTGATGCTGACTGTATAAATTTGGGGATCATTCGGTTGGGTTTTTGTATCAGTCAGCCATCAGTCTATCTCTCTGCCTGAATTCAGAGTT_-_ATGGGGAAGACGCGCGAAGAATTTGACTGTTTTTCCTGGCTCGGGCACAACTCTAAGTCAAGAGTTGTGAACACTGACTTGGACCCCGTTCTGCTGGTCCCTGGAATTGGCGGTTCCATTCTGGATGCAGTCAATAAGAAGGATGGAAGCTCTGAACGGGTGTGGGTGCGGATACTTATGGCTTCTTGTGAGTTCAAGAAGAAGCTCTGGGCTGTCTACAATCCTGAGACAGGGTATGCAGAGCCTTTGGATCCCAATATTAAAATTGAAGTGCCAGATGATGACTATGGTCTTTATGCAATTGACATGTTGGATCCTTCATGGCTACCAAAACTTCTCCACATTAAGGAATTGTACTATTTTCATGATCTGATTGATACACTACTTGACTGGGGTTAC

Fln Alignment:

biogeco2_mira_c5434___CFSWLGHNSKSRVVNTDLDPVLLVPGIGGSILDAVNKKDGSSERVWVRILMASCEFKKKLWAVYNPETGYAEPLDPNIKIEVPDDDYGLYAIDMLDPSWLPKLLHIKELYYFHDLIDTLLDWGY
Q93V61_________________CPCWGTNDDENAGEVADRDPVLLVSGIGGSILHSKKKNSKSEIRVWVRIFLANLAFKQSLWSLYNPKTGYTEPLDDNIEVLVPDDDHGLYAIDILDPSWFVKLCHLTEVYHFHDMIEMLVGCGY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
386		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain