SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9705

Length: 242 nt

UniGene Fasta

>biog2_v2.0_unigene9705
GAAAGGAGCAATGGATTCTGATCATGGCAAGATTTTTATCGGAGGAATATCATGGGACACCTCTGAAGAGAGGCTCAAGGATTATTTCGGTCAATACGGCCAGGTGGTAGATGTTGTCATTATGAAAGACAGGACTACTGGTCGAGCAAGAGGCTTCGGCTTTGTGGTCTTTGGAGACCCTTCTGTTGCAGATCGAGTTATTCAGGAGAAGCACACTATCGACGGCAGAACAGTTGAAGACG

Ace file of the UniGene biog2_v2.0_unigene9705

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6059	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative RNA-binding protein [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	heterogeneous nuclear ribonucleoprotein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	77%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A839

Fln msg: Distance to subject end: 319 aas, your sequence is shorter than subject: 77 - 396

Fln protein: MDSDHGKIFIGGISWDTSEERLKDYFGQYGQVVDVVIMKDRTTGRARGFGFVVFGDPSVADRVIQEKHTIDGRTVED

Protein Length: 78

Fln nts: GAAAGGAGCA_-_ATGGATTCTGATCATGGCAAGATTTTTATCGGAGGAATATCATGGGACACCTCTGAAGAGAGGCTCAAGGATTATTTCGGTCAATACGGCCAGGTGGTAGATGTTGTCATTATGAAAGACAGGACTACTGGTCGAGCAAGAGGCTTCGGCTTTGTGGTCTTTGGAGACCCTTCTGTTGCAGATCGAGTTATTCAGGAGAAGCACACTATCGACGGCAGAACAGTTGAAGACG

Fln Alignment:

biogeco2_mira_c5432___MDSDHGKIFIGGISWDTSEERLKDYFGQYGQVVDVVIMKDRTTGRARXXXXXXXXDPSVADRVIQEKHTIDGRTVE
D5A839_________________MDSDHGKIFIGGISWDTSEDRLKDYFGNYGQVVDVVIMKDRTTGRARGFGFVVFGDPSVADRVIQEKHTIDGRAVE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
159			66	33	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain