SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9672

Length: 370 nt

UniGene Fasta

>biog2_v2.0_unigene9672
TTCGTGGGAGTGACCATGGAACACTCACAAATGAATATGGTAAGGTGACAAGTCATTTGCAGGGCATGTTTTATAATACAGCAAGACTGTTACGAGCTGGTCTGAAGCCTGCTTATGTCTTTGATGGACAGCCTCCGTATTTGAAAAGCGAAGAACTTAGGAAAGGGATTCTAGGAGTGAGGAAGCGGTAAATAAGTTAGAAAGGCGATTGAGATAGGTGATGATGCAGAGATTGGAAAATACAGCAAACAGGCAGTTAAGGTGACAAAACAACATAATGAGGATTGTAGAAAGCTTCTAAGACTCATGGGAGTGCCTGTAATTGAGTCTCCTAGTTGTAAGTAACAGTAGGCAGAGTGTGCATCTTTGT

Ace file of the UniGene biog2_v2.0_unigene9672

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6684	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	flap endonuclease-1 [Arabidopsis thaliana] gb\|AED93576.1\| flap endonuclease-1 [Arabidopsis thaliana]	-	-	57%
FL-Next	sp=Flap endonuclease 1-A; Physcomitrella patens subsp. patens (Moss).	-	-	72%
Blast2go	flap endonuclease 1a	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	77%
Blast2go	DNA replication, removal of RNA primer	GO:0043137	Biological Process	77%
Blast2go	5'-3' exonuclease activity	GO:0008409	Molecular Function	77%
Blast2go	5'-flap endonuclease activity	GO:0017108	Molecular Function	77%
Blast2go	DNA binding	GO:0003677	Molecular Function	77%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	77%
Blast2go	nuclear lumen	GO:0031981	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	5'-3' exonuclease, N-terminal	IPR002421	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	DNA repair protein (XPGC)/yeast Rad	IPR006084	-	-
Sma3	XPG N-terminal	IPR006085	-	-
Sma3	XPG/RAD2 endonuclease	IPR006086	-	-
Sma3	Helix-hairpin-helix motif, class 2	IPR008918	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: A9S0B8

Fln msg: Separated hits, possible frame ERROR between 164 and 205, Unexpected STOP codon at 3' end. Distance to subject end: 227 aas, your sequence is shorter than subject: 115 - 394

Fln protein: RGSDHGTLTNEYGKVTSHLQGMFYNTARLLRAGLKPAYVFDGQPPYLKSEELRxxxxxxxxxxxxxxxAIEIGDDAEIGKYSKQAVKVTKQHNEDCRKLLRLMGVPVIESPSCK*

Protein Length: 116

Fln nts: TTCGTGGGAGTGACCATGGAACACTCACAAATGAATATGGTAAGGTGACAAGTCATTTGCAGGGCATGTTTTATAATACAGCAAGACTGTTACGAGCTGGTCTGAAGCCTGCTTATGTCTTTGATGGACAGCCTCCGTATTTGAAAAGCGAAGAACTTAGGAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGCGATTGAGATAGGTGATGATGCAGAGATTGGAAAATACAGCAAACAGGCAGTTAAGGTGACAAAACAACATAATGAGGATTGTAGAAAGCTTCTAAGACTCATGGGAGTGCCTGTAATTGAGTCTCCTAGTTGTAAGTAACAGTAGGCAGAGTGTGCATCTTTGT

Fln Alignment:

biogeco2_mira_c5380___LTNEYGKVTSHLQGMFYNTARLLRAGLKPAYVFDGQPPYLKSEELRKxxxxxxxxxxxxxxAIEIGDDAEIGKYSKQAVKVTKQHNEDCRKLLRLMGVPVIESPSCK*Q*AECASL
A9S0B8_________________LTNDAGEVTSHLQGMFNRTIRVLEAGLKPVYVFDGQPPDLKKRELAKxxxxxxxxxxxxxxAKETGNEADVEKYSKKTVKVTKQHNEDCRKLLRLMGVPVVEAPS--EAEAECASL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
214	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain