SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9644

Length: 518 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9644
GAAATGATAATAATGCAGTCCCCTCTCAACGTTCTGAATGCCTCAAGTTATCGCACCACACTGGTGACAAATTCCTTAACTCTTCCACGCCTATGGAGCGGCCGGTCATACGGGAATTGTACCACCAGGGGCTGGCTTCCACACAAGCCATTGCTGCAGGTGTTCCAGGTGCACACAATCACCAGGCATTTGGGGTCGAACAGAACGCCTCGGCTTAGAGCACGGGCCGGCTCCGATCGCCCCCAGAGAACTTCAGACATGATTTCTCAGTTGGAACTTGATAAATCGGCGTCTCTTCCAACAAGACGAAGATCTGTCAGTGCGATATTTTGGCTTCTGCTTCTCAACATTGGAATCTATGTGGCAGATCATTGGTTACGGTTTCCGCCAATCAGATGTTTCTATCTTTATCATGACTTGCCAAACTGGTACCAGTTCATTACAGCGACATTTTGTCATGTTAATTTGGAGCCACCTTTCCAGCAACTTGTTTTTCTTGTACATTTTTGGCAAATTGG

Ace file of the UniGene biog2_v2.0_unigene9644 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5057	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	rhomboid-like protein 11 [Arabidopsis thaliana] gb\|AAP21234.1\| At5g25752 [Arabidopsis thaliana] dbj\|BAF00010.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED93479.1\| rhomboid-like protein 11 [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	rhomboid family protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	82%
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	82%
Blast2go	Methane metabolism	00680	82%
Blast2go	Phenylpropanoid biosynthesis	00940	82%
Blast2go	Biosynthesis of phenylpropanoids	01061	82%
Blast2go	Metabolic pathways	01100	82%
Blast2go	Biosynthesis of secondary metabolites	01110	82%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	82%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	82%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	82%
Blast2go	heme binding	GO:0020037	Molecular Function	82%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	82%
Blast2go	integral to membrane	GO:0016021	Cellular Component	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S54, rhomboid	IPR002610	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P037

Fln msg: Distance to subject end: 136 aas, your sequence is shorter than subject: 171 - 305

Fln protein: MIIMQSPLNVLNASSYRTTLVTNSLTLPRLWSGRSYGNCTTRGWLPHKPLLQVFQVHTITRHLGSNRTPRLRARAGSDRPQRTSDMISQLELDKSASLPTRRRSVSAIFWLLLLNIGIYVADHWLRFPPIRCFYLYHDLPNWYQFITATFCHVNLEPPFQQLVFLVHFWQI

Protein Length: 172

Fln nts: GAA_-_ATGATAATAATGCAGTCCCCTCTCAACGTTCTGAATGCCTCAAGTTATCGCACCACACTGGTGACAAATTCCTTAACTCTTCCACGCCTATGGAGCGGCCGGTCATACGGGAATTGTACCACCAGGGGCTGGCTTCCACACAAGCCATTGCTGCAGGTGTTCCAGGTGCACACAATCACCAGGCATTTGGGGTCGAACAGAACGCCTCGGCTTAGAGCACGGGCCGGCTCCGATCGCCCCCAGAGAACTTCAGACATGATTTCTCAGTTGGAACTTGATAAATCGGCGTCTCTTCCAACAAGACGAAGATCTGTCAGTGCGATATTTTGGCTTCTGCTTCTCAACATTGGAATCTATGTGGCAGATCATTGGTTACGGTTTCCGCCAATCAGATGTTTCTATCTTTATCATGACTTGCCAAACTGGTACCAGTTCATTACAGCGACATTTTGTCATGTTAATTTGGAGCCACCTTTCCAGCAACTTGTTTTTCTTGTACATTTTTGGCAAATTGG

Fln Alignment:

biogeco2_mira_c5338___MQSPLNVLNASSYRTTLVTNSLTLPRLWSGRSYGNCTTRGWLPHKPLLQVFQVHTITRHLGSNRTPRLRARAGSDRPQRTSDMISQLELDKSASLPTRRRSVSAIFWLLLLNIGIYVADHWLRFPPIRCFYLYHDLPNWYQFITATFCHVNLEPPFQQLVFLVHFWQI
A9P037_________________MQSPINILNASSYHTTLVANSLTFPRLWSVRSHGNYTTRGWLPPKPLLQAFRVHIFPRHLQSNRTLQLRTRAGSDPQRRTSDMISQLELDKSESLSTRRRPVSAIFWLLLLNIGIYVADHLLQFVPIKWLYLYHDLPQWYQFFTATFCHVNWSHLSSNLFFLYIFGKL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
157	75			25	0.996473
169	75	25			0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain