SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9639

Length: 300 nt

UniGene Fasta

>biog2_v2.0_unigene9639
ATGGGATGGGGAGTTAATGTACAACCTTTATCAGGATCTCCTGCAAATTTTCATGTCTACACGGCATTGCTGAAGCCACATGATCGAATCATGGCACTTGATCTCCCACATGGTGGTCATTTATCTCATGGTTACCAGACGGATACCAAAAGATTTCCGCAGTCTCGGCGTACTTTGAGACAATGCCGTACAGATTGAACGAATCAACTGGTATTATCGACTATGAACAGAGAAAAGTTTGATCGTTGAGAATGTCTATGCTAGCTATGAATTCTAATCTGAAACTACATACAGTGGTCA

Ace file of the UniGene biog2_v2.0_unigene9639

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15538	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Serine hydroxymethyltransferase n=2 Tax=Picea sitchensis RepID=A9NUX0_PICSI	-	-	96%
FL-Next	sp=Serine hydroxymethyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	serine hydroxymethyltransferase	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	glycine decarboxylation via glycine cleavage system	GO:0019464	Biological Process	89%
Blast2go	response to cold	GO:0009409	Biological Process	89%
Blast2go	photorespiration	GO:0009853	Biological Process	89%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	poly(U) RNA binding	GO:0008266	Molecular Function	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	catalytic activity	GO:0003824	Molecular Function	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%
Blast2go	stromule	GO:0010319	Cellular Component	89%
Blast2go	apoplast	GO:0048046	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Serine hydroxymethyltransferase	IPR001085	-	0.0	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUX0

Fln msg: Overlapping hits, possible frame ERROR between 153 and 132, Unexpected STOP codon at 3' end. Distance to subject end: 281 aas, your sequence is shorter than subject: 81 - 519

Fln protein: MGWGVNVQPLSGSPANFHVYTALLKPHDRIMALDLPHGGHLSHxxxxxxxxxSAVSAYFETMPYRLNESTGIIDYEQRKV*

Protein Length: 82

Fln nts: ATGGGATGGGGAGTTAATGTACAACCTTTATCAGGATCTCCTGCAAATTTTCATGTCTACACGGCATTGCTGAAGCCACATGATCGAATCATGGCACTTGATCTCCCACATGGTGGTCATTTATCTCATxxxxxxxxxxxxxxxxxxxxxxxxxxxTCCGCAGTCTCGGCGTACTTTGAGACAATGCCGTACAGATTGAACGAATCAACTGGTATTATCGACTATGAACAGAGAAAAGTTTGATCGTTGAGAATGTCTATGCTAGCTATGAATTCTAATCTGAAACTACATACAGTGGTCA

Fln Alignment:

biogeco2_mira_c5329___WGVNVQPLSGSPANFHVYTALLKPHDRIMALDLPHGGHxxxxxxxxxxxISAVSAYFETMPYRLNESTGIIDYEQ
A9NUX0_________________WGVNVQPLSGSPANFHVYTALLKPHDRIMALDLPHGGHxxxxxxxxxxxISAVSAYFETMPYRLNESTGIIDYDQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain