SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9590

Length: 329 nt

UniGene Fasta

>biog2_v2.0_unigene9590
TTCTTTGGCGTCGAATCCAGGATTGGGCTGAGTACATATTGAAGTTTGTTCATGAGAATGGCCTCGAAGATGGTGTTATGACTCTTGAAGAAATTCGATCTGGTGTTGAGTCAAGAGGGACAGAGCTTGCTGGCATTGATCGCATAGTTTTAATCCGGGCTCTTAAGTTGCTAGAGCAACGTGGGAAAGCTGTGATTTTTAAAGGAACATCCACAGATGATGAAGGTGTCAAATTTTCTGCTTAGGGCTCAGCTTCAAGAGTGCTGTGTTGTGAGAATAATAATCTGAAACTTCATGTTCTATGGTTTCTATTGAAAGAATAAAATCGA

Ace file of the UniGene biog2_v2.0_unigene9590

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10753	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	vacuolar protein sorting-associated protein 25 [Arabidopsis thaliana] ref\|NP_974570.1\| vacuolar protein sorting-associated protein 25 [Arabidopsis thaliana] sp\|Q8VZC9.1\|VPS25_ARATH RecName: Full=Vacuolar protein sorting-associated protein 25; Short=AtVPS2	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	vacuolar protein sorting-associated protein 25	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	0.0	87%
Blast2go	ESCRT II complex	GO:0000814	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	ESCRT-II complex, vps25 subunit	IPR008570	-	-
Sma3	ESCRT-II complex, Vps25 subunit, C-terminal winged helix	IPR014040	-	-
Sma3	ESCRT-II complex, Vps25 subunit, N-terminal winged helix	IPR014041	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9L2

Fln msg: your sequence is shorter than subject: 81 - 176

Fln protein: LWRRIQDWAEYILKFVHENGLEDGVMTLEEIRSGVESRGTELAGIDRIVLIRALKLLEQRGKAVIFKGTSTDDEGVKFSA*

Protein Length: 82

Fln nts: TTCTTTGGCGTCGAATCCAGGATTGGGCTGAGTACATATTGAAGTTTGTTCATGAGAATGGCCTCGAAGATGGTGTTATGACTCTTGAAGAAATTCGATCTGGTGTTGAGTCAAGAGGGACAGAGCTTGCTGGCATTGATCGCATAGTTTTAATCCGGGCTCTTAAGTTGCTAGAGCAACGTGGGAAAGCTGTGATTTTTAAAGGAACATCCACAGATGATGAAGGTGTCAAATTTTCTGCTTAG___GGCTCAGCTTCAAGAGTGCTGTGTTGTGAGAATAATAATCTGAAACTTCATGTTCTATGGTTTCTATTGAAAGAATAAAATCGA

Fln Alignment:

biogeco2_mira_c5252___LWRRIQDWAEYILKFVHENGLEDGVMTLEEIRSGVESRGTELAGIDRIVLIRALKLLEQRGKAVIFKGTSTDDEGVKFSA
D5A9L2_________________LWRRIQDWAEYILKFVRENGLEDGVMTLEEIRSGVESRGTELAGIDRIVLIRALKLLEQRGKAVMFKGTSTDDEGVKFSA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
144	66		33		0.997458

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain