SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9577

Length: 352 nt

UniGene Fasta

>biog2_v2.0_unigene9577
ATGACACTGACAAACGGTTTACTGCATGGGGTTTTGGAGGCAGACCAATTGATGGGCCAGTTTCTCATTGTTTCAATTTGAATGGAAGTGGTAGCCATGCTGAGGTTGAAGGGATAAGTGGTATTATGTCTGCATATGCAAGTGCCTTACGTAATGTTGCACTTGCTGGACCAACTTTATTTGGTCAAGTGATCAATTGTGCAGCTCAAACTGCTGATATAAATGCAGGACAGCGGAAATACTATGTCCTCCTTATCATCACGGATGGAGTCATTACTGATCTTCAAGAAACAAAGGATGCCATCATCAGGGCTTCAGATCTGCCTCTTTCAATTCTTATTGTGGTGTTGGT

Ace file of the UniGene biog2_v2.0_unigene9577

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5291	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	calcium-dependent phospholipid-binding copine-like protein [Arabidopsis thaliana] ref\|NP_974977.1\| calcium-dependent phospholipid-binding copine-like protein [Arabidopsis thaliana] sp\|Q941L3.2\|BON1_ARATH RecName: Full=Protein BONZAI 1; AltName: Full=COPIN	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein bonzai 3-like	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of cell death	GO:0060548	Biological Process	78%
Blast2go	plant-type hypersensitive response	GO:0009626	Biological Process	78%
Blast2go	response to humidity	GO:0009270	Biological Process	78%
Blast2go	positive regulation of cell size	GO:0045793	Biological Process	78%
Blast2go	positive regulation of cellular defense response	GO:0010186	Biological Process	78%
Blast2go	cellular homeostasis	GO:0019725	Biological Process	78%
Blast2go	response to temperature stimulus	GO:0009266	Biological Process	78%
Blast2go	calcium-dependent phospholipid binding	GO:0005544	Molecular Function	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Copine	IPR010734	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLG3

Fln msg: Distance to subject end: 71 aas, your sequence is shorter than subject: 116 - 585

Fln protein: DTDKRFTAWGFGGRPIDGPVSHCFNLNGSGSHAEVEGISGIMSAYASALRNVALAGPTLFGQVINCAAQTADINAGQRKYYVLLIITDGVITDLQETKDAIIRASDLPLSILIVVL

Protein Length: 117

Fln nts: ATGACACTGACAAACGGTTTACTGCATGGGGTTTTGGAGGCAGACCAATTGATGGGCCAGTTTCTCATTGTTTCAATTTGAATGGAAGTGGTAGCCATGCTGAGGTTGAAGGGATAAGTGGTATTATGTCTGCATATGCAAGTGCCTTACGTAATGTTGCACTTGCTGGACCAACTTTATTTGGTCAAGTGATCAATTGTGCAGCTCAAACTGCTGATATAAATGCAGGACAGCGGAAATACTATGTCCTCCTTATCATCACGGATGGAGTCATTACTGATCTTCAAGAAACAAAGGATGCCATCATCAGGGCTTCAGATCTGCCTCTTTCAATTCTTATTGTGGTGTTGGT

Fln Alignment:

biogeco2_mira_c5235___DTDKRFTAWGFGGRPIDGPVSHCFNLNGSGSHAEVEGISGIMSAYASALRNVALAGPTLFGQVINCAAQTADINAGQRKYYVLLIITDGVITDLQETKDAIIRASDLPLSILIV
B8LLG3_________________DTDKRFPAWGFGGRPIDGPVSHCFNLNGSGSYAEVEGISGIMSAYASALRNVSLAGPTLFGQVINSAAQIADIHAGQRKYYVLLIITDGVITDLQETKDAIVRASDLPLSILIV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
211		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain