SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9571

Length: 411 nt

UniGene Fasta

>biog2_v2.0_unigene9571
CAATAGTGAGTGGTACAATGAGACTACTCTTCTCAACAAAGGCCAACCTGTTGATTTTGATGGTTACATGAGAGTGGGGTAGACACAGAAGTTTTCCTTAGGGGAAAGACTCGTGTGGAGACCTTTAATAACTTGACCAAAGACTGCAAGGATGGAATCAATACATGTTAACCTTGACACCAACAGAGATGAAGAGTGACCGAGGAGCAACGGGCACAACAGATAAATGTGATTAATATCTGAATTCTGGTTGGTCAGTCTTGGCTACTTTCTTTAACAAGATTAATTGTACAACTGGCAATTTTTTATTTCTGTTCTCTTAGTCAATTTTATTATACAGTTCTAGAATGTATCAAAGTCTCATTCAATTATCCAGTTGGAAATGCTGTTTCCAAGCTTATCTGTAGTAGG

Ace file of the UniGene biog2_v2.0_unigene9571

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27648	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	calcium ion binding protein [Arabidopsis thaliana] emb\|CAB78006.1\| putative protein [Arabidopsis thaliana] emb\|CAB82117.1\| putative protein [Arabidopsis thaliana] gb\|AAL08248.1\| AT4g08810/T32A17_120 [Arabidopsis thaliana] gb\|AAO11571.1\| At4g08810/T32A17_1	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	calcium ion binding protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	calcium ion binding	GO:0005509	Molecular Function	0.0	73%
Blast2go	nuclear outer membrane-endoplasmic reticulum membrane network	GO:0042175	Cellular Component	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXP4

Fln msg: Separated hits, possible frame ERROR between 76 and 79, your sequence is shorter than subject: 57 - 568

Fln protein: NSEWYNETTLLNKGQPVDFDGYMRxxVDTEVFLRGKTRVETFNNLTKDCKDGINTC*

Protein Length: 58

Fln nts: CAATAGTGAGTGGTACAATGAGACTACTCTTCTCAACAAAGGCCAACCTGTTGATTTTGATGGTTACATGAGAGTxxxGGTAGACACAGAAGTTTTCCTTAGGGGAAAGACTCGTGTGGAGACCTTTAATAACTTGACCAAAGACTGCAAGGATGGAATCAATACATGTTAACCTTGACACCAACAGAGATGAAGAGTGACCGAGGAGCAACGGGCACAACAGATAAATGTGATTAATATCTGAATTCTGGTTGGTCAGTCTTGGCTACTTTCTTTAACAAGATTAATTGTACAACTGGCAATTTTTTATTTCTGTTCTCTTAGTCAATTTTATTATACAGTTCTAGAATGTATCAAAGTCTCATTCAATTATCCAGTTGGAAATGCTGTTTCCAAGCTTATCTGTAGTAGG

Fln Alignment:

biogeco2_mira_c5227___NSEWYNETTLLNKGQPVDFDGYMRVxVDTEVFLRGKTRVETFNNLTKDCKDGINTC
A9NXP4_________________NSEWYNETMVLSNGKPVEFDGYMRVxVDTEVFYRGKKQIDTFGDLTKDCKDGAGTC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain