SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9534

Length: 362 nt

UniGene Fasta

>biog2_v2.0_unigene9534
CCCGAAAAGAAGATTAAAGGCGCCAATATCAGTGCCCCGCCTACGAAGGTTCTGCTACTTCGAAACATGGTTGGTCCCGGAGAAGTGGATGATGAACTAGAAGATGAAGTTGCTTCGGAGTGTGCAAAGTATGGAACAGTGACCCGTGTGCTGATCTTTGAGATCACTGAACCAGATTTCCCAGTGGATGAAGCCGTTCGAATCTTTGTGCAGTTTGAGCGATCTGAGCAAACAACTAAGGCTTTGGTTGACCTTGATGGTCGTTTTTCGCTGGCAGGGTAGTCCATGCAACCTTCTATGATGAAGAGAAGTTTAATAGGAATGAATTGGCACCTGCACCAGGGGAGATACCAGGCTACCCT

Ace file of the UniGene biog2_v2.0_unigene9534

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1420	2/3
SustainPine v2.0	sp_v2.0_unigene77515	1/3

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-damage-repair/toleration protein DRT111 [Arabidopsis thaliana] sp\|P42698.2\|DR111_ARATH RecName: Full=DNA-damage-repair/toleration protein DRT111, chloroplastic; Flags: Precursor gb\|AAF19751.1\|AC009917_10 Strong similarity to gi\|1169200 DNA-Damage-Repa	-	-	72%
FL-Next	sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	78%
Blast2go	dna-damage-repair toleration protein drt111	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	89%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	89%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	G-patch domain	IPR000467	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA recognition motif domain, eukaryote	IPR003954	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Splicing factor, SPF45	IPR016967	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P42698

Fln msg: Overlapping hits, possible frame ERROR between 267 and 264, STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 121 - 387

Fln protein: PEKKIKGANISAPPTKVLLLRNMVGPGEVDDELEDEVASECAKYGTVTRVLIFEITEPDFPVDEAVRIFVQFERSEQTTKALVDLDGxxxAGRVVHATFYDEEKFNRNELAPAPGEIPGYP

Protein Length: 122

Fln nts: CCCGAAAAGAAGATTAAAGGCGCCAATATCAGTGCCCCGCCTACGAAGGTTCTGCTACTTCGAAACATGGTTGGTCCCGGAGAAGTGGATGATGAACTAGAAGATGAAGTTGCTTCGGAGTGTGCAAAGTATGGAACAGTGACCCGTGTGCTGATCTTTGAGATCACTGAACCAGATTTCCCAGTGGATGAAGCCGTTCGAATCTTTGTGCAGTTTGAGCGATCTGAGCAAACAACTAAGGCTTTGGTTGACCTTGATGGTxxxxxxxxxGCTGGCAGGGTAGTCCATGCAACCTTCTATGATGAAGAGAAGTTTAATAGGAATGAATTGGCACCTGCACCAGGGGAGATACCAGGCTACCCT

Fln Alignment:

biogeco2_mira_c5166___EKKIKGANISAPPTKVLLLRNMVGPGEVDDELEDEVASECAKYGTVTRVLIFEITEPDFPVDEAVRIFVQFERSEQTTKALVDLDGRxFAGRVVHATFYDEEKFNRNELAPAPGEIPGY
P42698_________________KKVVKSVNINGEPTRVLLLRNMVGPGQVDDELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRxFGGRTVRATFYDEEKFSKNELAPVPGEIPGY

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
115	33			66	0.997464
116		66		33	0.997464
119	66		33		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain