SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9529

Length: 435 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9529
ATGGGCAGCATATGGAGAAGGGTTAGAACATGATCCCATGAATGCGGTATTGCTTTGTAACAGAGCGGCCTGCAGATCAAAGCTTGATCAGTGGGACAGGTCAGTGGAAGATTGTAATCTAGCATTAAGCGTTCAACCCAACTACACTAAGGCTCTTCTTAGGCGAGCCGCATCGAATACTAAGCTTGAGCGATGGGAGGAAGCTCTAAGGGATTATGAGCTTTTGAGGAAGGAATTGCCATGGGATAAAGAGGTGCTGCAGTCTTATAACCATGCTCAAGTAGAACTCAAGAAATCTCGTGGAGAAGGGATTTACAATATGAAGTTTGGAGGGGAAGTAGAGGTGGTTTCCAGTGATGATCAATTCAGAGATGCTATTAATTCACCTGGCCTAGCCATAGTCCATTTCAACACAAGATCAAATGACCAATGAAC

Ace file of the UniGene biog2_v2.0_unigene9529 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8434	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Small glutamine-rich tetratricopeptide repeat-containing protein A, putative n=1 Tax=Ricinus communis RepID=B9SE65_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	tpr repeat-containing thioredoxin ttl1-like	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	0.0	71%
Blast2go	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3		IPR012335	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015609	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRV6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 307 aas, your sequence is shorter than subject: 144 - 486

Fln protein: WAAYGEGLEHDPMNAVLLCNRAACRSKLDQWDRSVEDCNLALSVQPNYTKALLRRAASNTKLERWEEALRDYELLRKELPWDKEVLQSYNHAQVELKKSRGEGIYNMKFGGEVEVVSSDDQFRDAINSPGLAIVHFNTRSNDQ*

Protein Length: 145

Fln nts: ATGGGCAGCATATGGAGAAGGGTTAGAACATGATCCCATGAATGCGGTATTGCTTTGTAACAGAGCGGCCTGCAGATCAAAGCTTGATCAGTGGGACAGGTCAGTGGAAGATTGTAATCTAGCATTAAGCGTTCAACCCAACTACACTAAGGCTCTTCTTAGGCGAGCCGCATCGAATACTAAGCTTGAGCGATGGGAGGAAGCTCTAAGGGATTATGAGCTTTTGAGGAAGGAATTGCCATGGGATAAAGAGGTGCTGCAGTCTTATAACCATGCTCAAGTAGAACTCAAGAAATCTCGTGGAGAAGGGATTTACAATATGAAGTTTGGAGGGGAAGTAGAGGTGGTTTCCAGTGATGATCAATTCAGAGATGCTATTAATTCACCTGGCCTAGCCATAGTCCATTTCAACACAAGATCAAATGACCAATGAAC

Fln Alignment:

biogeco2_mira_c5161___YGEGLEHDPMNAVLLCNRAACRSKLDQWDRSVEDCNLALSVQPNYTKALLRRAASNTKLERWEEALRDYELLRKELPWDKEVLQSYNHAQVELKKSR
B8LRV6_________________YSQAIELNSQNAVYWANRAFAHTKLEEYGSAIQDATTAVEIDAKYTKGYYRRGAAYLAMGKFKEALKDFQQVKKICPNDPDATKKLKECEKAVQKLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain