SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9444

Length: 423 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9444
AACCAAATAAAAGGTTGTGAATTCATGGCTTTGCTTAAATTACGTTGCTGGCCTCTTACAATGTAAGCTGTGGCTGCCAAGGACATGGCCGGTGAGGAGCTCCTGGATTCCTCAATTTGTGCTCGTGCAGGGTCGTTGTGCGCAGGGGATTCTAGCAATGCTTTCAGTGGGAAAGCCTTGTGGCAATCGTCAGTTTACGAGTTCGATTCCCTGGAAGAGTTAGCCTCTGCCCGCTACTTTTACAGACGATATGGTTCTCCCAACTCTGACGAACTTGCAAAGGCCGTCGCCCTTCTTGAAGCAGCCGAACAAGGTTTGGCGACATCCTCTGGCATGGGGGCTATAGTGGCAGCAATATTATCTTTCTGCAAAGCAGGTGATCTTATTTTGGCACAGTTTGACTGCTATGGTATCACTCGAGAG

Ace file of the UniGene biog2_v2.0_unigene9444 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene336	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Methionine gamma-lyase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWD7_HALO1	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	46%
Blast2go	cys met metabolism pyridoxal-phosphate-dependent protein	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	lyase activity	GO:0016829	Molecular Function	0.0	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D8T3R3

Fln msg: Distance to subject end: 278 aas, your sequence is shorter than subject: 113 - 384

Fln protein: MAGEELLDSSICARAGSLCAGDSSNAFSGKALWQSSVYEFDSLEELASARYFYRRYGSPNSDELAKAVALLEAAEQGLATSSGMGAIVAAILSFCKAGDLILAQFDCYGITRE

Protein Length: 114

Fln nts: AACCAAATAAAAGGTTGTGAATTCATGGCTTTGCTTAAATTACGTTGCTGGCCTCTTACAATGTAAGCTGTGGCTGCCAAGGAC_-_ATGGCCGGTGAGGAGCTCCTGGATTCCTCAATTTGTGCTCGTGCAGGGTCGTTGTGCGCAGGGGATTCTAGCAATGCTTTCAGTGGGAAAGCCTTGTGGCAATCGTCAGTTTACGAGTTCGATTCCCTGGAAGAGTTAGCCTCTGCCCGCTACTTTTACAGACGATATGGTTCTCCCAACTCTGACGAACTTGCAAAGGCCGTCGCCCTTCTTGAAGCAGCCGAACAAGGTTTGGCGACATCCTCTGGCATGGGGGCTATAGTGGCAGCAATATTATCTTTCTGCAAAGCAGGTGATCTTATTTTGGCACAGTTTGACTGCTATGGTATCACTCGAGAG

Fln Alignment:

biogeco2_mira_c4999___SSICARAGSLCAGDSSNAFSGKALWQSSVYEFDSLEELASARYFYRRYGSPNSDXXXXXXXXXXXXEQGLATSSGMGAIVAAILSFCKAGDLILAQFDCYGIT
D8T3R3_________________ATLCCHSGKPLAKGSAK----QVLCLASANKFDKFSDYAEAAHVYRRYGSPNTKELGDAIALLEGGESGLACSSGMGAILAALLAVCKRGDVLVAPRDPYGGT

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
286	66		33		0.997452
290		66		33	0.997452
365	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain