SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9434

Length: 510 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9434
GTTGAGGTGACCTTTATGCAATGGAGGATTTGAAAGAGTGGAAACAGAATGAATATGGGGGTTGGAGGCTTGGAAATCCCTGTGCAGGTTGAGGGAATTATGTCCTCTGATCCAGTGCATAACCAATTATGTGTCCATGGACATAATGGCTAATACCCTTCTGGCAGCAGGGGCTTCTCCGGCCATGGTTCATGCCGTTGAAGAGATTGCAGATTTTACTCCTCATGCTAAGGGCTTGTGCATCAATATTGGGACTCTGACCCCTGATTGGACTGTTTCAATGAAGGCTGCTGCAGCCAAGGCTGCAGAGGCTCAGAATCCTTGGGTATTGGATCCAGTGGCTGCAGGGGCTTCTAAATATAGAATGAATAGATGTCTGGAGCTTGTTGATCTTAAACCCACAGTTATACGAGGAAATGCTTCAGAAATCTTGGCATTAGCTGGTGCTTCTATTGGCTCAGCCAAGGGAGTAGACAGCAGCCATGTATCAACTGATGCCTTAGAAGCTGC

Ace file of the UniGene biog2_v2.0_unigene9434 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10098	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	hydroxyethylthiazole kinase [Arabidopsis thaliana] dbj\|BAB03021.1\| hydoxyethylthiazole kinase-like protein [Arabidopsis thaliana] gb\|AAQ62427.1\| At3g24030 [Arabidopsis thaliana] dbj\|BAD43718.1\| putative hydoxyethylthiazole kinase [Arabidopsis thaliana] gb	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	hydroxyethylthiazole kinase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.1.5-	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	thiamine biosynthetic process	GO:0009228	Biological Process	77%
Blast2go	phosphorylation	GO:0016310	Biological Process	77%
Blast2go	hydroxyethylthiazole kinase activity	GO:0004417	Molecular Function	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Hydroxyethylthiazole kinase	IPR000417	-	0.0	-
Sma3		IPR011144	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPS1

Fln msg: Distance to subject end: 115 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 152 - 279

Fln protein: IWGLEAWKSLCRLRELCPLIQCITNYVSMDIMANTLLAAGASPAMVHAVEEIADFTPHAKGLCINIGTLTPDWTVSMKAAAAKAAEAQNPWVLDPVAAGASKYRMNRCLELVDLKPTVIRGNASEILALAGASIGSAKGVDSSHVSTDALEA

Protein Length: 153

Fln nts: GTTGAGGTGACCTTTATGCAATGGAGGATTTGAAAGAGTGGAAACAGAATGAATATGGGGGTTGGAGGCTTGGAAATCCCTGTGCAGGTTGAGGGAATTATGTCCTCTGATCCAGTGCATAACCAATTATGTGTCCATGGACATAATGGCTAATACCCTTCTGGCAGCAGGGGCTTCTCCGGCCATGGTTCATGCCGTTGAAGAGATTGCAGATTTTACTCCTCATGCTAAGGGCTTGTGCATCAATATTGGGACTCTGACCCCTGATTGGACTGTTTCAATGAAGGCTGCTGCAGCCAAGGCTGCAGAGGCTCAGAATCCTTGGGTATTGGATCCAGTGGCTGCAGGGGCTTCTAAATATAGAATGAATAGATGTCTGGAGCTTGTTGATCTTAAACCCACAGTTATACGAGGAAATGCTTCAGAAATCTTGGCATTAGCTGGTGCTTCTATTGGCTCAGCCAAGGGAGTAGACAGCAGCCATGTATCAACTGATGCCTTAGAAGCTGC

Fln Alignment:

biogeco2_mira_c4979___IWGLEAWKSLCRLRELCPLIQCITNYVSMDIMANTLLAAGASPAMVHAVEEIADFTPHAKGLCINIGTLTPDWTVSMXXXXXXXXXAQNPWVLDPVAAGASKYRMNRCLELVDLKPTVIRGNASEILALAGASIGSAKGVDSSHVSTDALEA
A9NPS1_________________IWGLEAWKSLCRVRELCPLIQCITNYVSMDIMANTLLAAGASPAMVHAVEEIADFTPHAKGLCINIGTLTPDWTVSMKAAAAKAAESQKPWVLDPVAAGASTYRMERCLELVDLKPTVIRGNASEILALAGASIGSTKGVDSSHVSTDALEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain