SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9395

Length: 500 nt

UniGene Fasta

>biog2_v2.0_unigene9395
GAATTCATCCCTCAAGATAAGGAAAGCCAGGCGGCACCAGTTGGCCTCAATGAGGTTGAAATTGGCAAAGAGTACGAACTGATTATTACAACATTTGGAGGTCTCTATAGGTACAGGCTGGATGATGTGGTTAAAGTGAACGGTTTTTACAATTCCTCTCCCCGGCTTTCATATGCTTATCCCAAGAACTCAATTCTCTCCTGCATAAACATTGACAAGACGACTGAAAGAGACGTGCAACTAATCGTGAACAAGGCCGCCGAGTTGCTGAACAAGGAACAGACTTGGAGTTGGTGGACTTTACAAGCTATGCAGACCTCTCAAGTGAGCCTGGTCACTATGTAATATTCTGGGAGCTCAGCAGAGACATTGGTGATGCACATGACGAAGTTTTTCAGAAATGCTGTTGCATACTGGACGAGGCTTTGGTCGACGAGTTGTACTTTTGTAACAGAAAGGAGAACAGAATTGGAGCGCTTGAACTTCGCATTGTAGCCAAA

Ace file of the UniGene biog2_v2.0_unigene9395

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7039	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin-regulated protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCH6_CUCME	-	-	52%
FL-Next	tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine).	-	-	45%
Blast2go	probable indole-3-acetic acid-amido synthetase -like	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	0.0	70%
Blast2go	response to light stimulus	GO:0009416	Biological Process	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	GH3 auxin-responsive promoter	IPR004993	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4LAM0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 62 aas, your sequence is shorter than subject: 115 - 615

Fln protein: EFIPQDKESQAAPVGLNEVEIGKEYELIITTFGGLYRYRLDDVVKVNGFYNSSPRLSYAYPKNSILSCINIDKTTERDVQLIVNKAAELLNKEQTWSWWTLQAMQTSQVSLVTM*

Protein Length: 116

Fln nts: GAATTCATCCCTCAAGATAAGGAAAGCCAGGCGGCACCAGTTGGCCTCAATGAGGTTGAAATTGGCAAAGAGTACGAACTGATTATTACAACATTTGGAGGTCTCTATAGGTACAGGCTGGATGATGTGGTTAAAGTGAACGGTTTTTACAATTCCTCTCCCCGGCTTTCATATGCTTATCCCAAGAACTCAATTCTCTCCTGCATAAACATTGACAAGACGACTGAAAGAGACGTGCAACTAATCGTGAACAAGGCCGCCGAGTTGCTGAACAAGGAACAGACTTGGAGTTGGTGGACTTTACAAGCTATGCAGACCTCTCAAGTGAGCCTGGTCACTATGTAATATTCTGGGAGCTCAGCAGAGACATTGGTGATGCACATGACGAAGTTTTTCAGAAATGCTGTTGCATACTGGACGAGGCTTTGGTCGACGAGTTGTACTTTTGTAACAGAAAGGAGAACAGAATTGGAGCGCTTGAACTTCGCATTGTAGCCAAA

Fln Alignment:

biogeco2_mira_c4911___ESQAAPVGLNEVEIGKEYELIITTFGGLYRYRLDDVVKVNGFYNSSPRLSYAYPKNSILSCINIDKTTERDVQLIVNKAAELL
Q4LAM0_________________EQPAELVDLVDVKVGQEYELVITTYSGLYRYRVGDVLRVTGFHNAAPQFQFVCRKNVMLS-IDADKTDEAELHNAVMNAVKHL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain