SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9379

Length: 861 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene9379

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1480	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Oligopeptide transporter, putative n=1 Tax=Ricinus communis RepID=B9SH54_RICCO	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	nitrate transporter	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	69%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	69%
Blast2go	transport	GO:0006810	Biological Process	69%
Blast2go	transporter activity	GO:0005215	Molecular Function	69%
Blast2go	membrane	GO:0016020	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQS8

Fln msg: Distance to subject end: 260 aas, your sequence is shorter than subject: 286 - 649

Fln protein: LGGVLHLSNSESANIVTNFMGTLYLLSLFGGFLADSVLGRFKAIVIFGSIQALGVCLLAISTSLPSLQPPPCSGNHVEYCAPASGKMMAMLYVSLYLTALGAGSVKSNVSGFGSDQFDVEDPKESGKLIYFFNRFYFCISMGSLFAVTVLVYIQDNVGRGLGYGIPSGSMAFCVLLFLVFSNKYRYRRPAGSPVTRIVQVFVAAWRNRKRSLPSDPSLLNENEYGVAMGPGRERISHTDQLLCLDKAAIVDPSMNDPAKQSPWKIATVTSIEEVKMVVKLLPIWST

Protein Length: 287

Fln nts: TTTGGGTGGGGTGTTGCATCTTTCAAACTCGGAGTCTGCGAATATAGTTACTAATTTTATGGGCACCCTGTATCTTCTCAGCCTCTTCGGAGGCTTTCTGGCAGATTCGGTTCTAGGCCGCTTCAAAGCCATTGTAATATTTGGCTCAATTCAGGCCTTGGGTGTGTGTTTGCTAGCCATATCGACATCACTGCCAAGCCTCCAGCCTCCCCCCTGTTCAGGAAACCATGTTGAATATTGTGCCCCTGCAAGCGGTAAAATGATGGCTATGCTTTATGTGTCTCTGTATCTGACTGCTCTCGGCGCAGGAAGTGTGAAGTCCAATGTATCAGGGTTCGGGTCAGACCAGTTCGATGTCGAGGATCCTAAAGAATCTGGGAAGCTGATCTATTTCTTCAATCGATTCTACTTCTGCATCAGTATGGGCTCCTTGTTCGCAGTAACTGTGTTAGTTTACATACAGGATAACGTAGGAAGGGGATTGGGGTATGGAATCCCTTCTGGAAGCATGGCGTTTTGCGTCCTGCTATTCCTGGTATTTTCCAATAAGTATAGATATAGAAGACCTGCTGGAAGCCCTGTTACTCGGATAGTACAAGTGTTTGTTGCAGCTTGGAGAAATAGGAAGCGGAGTTTGCCCTCGGATCCGAGCCTCCTCAACGAGAATGAATACGGGGTTGCCATGGGGCCGGGCAGGGAGAGAATTTCACATACTGACCAGCTTCTGTGCCTGGACAAAGCTGCCATAGTGGATCCCAGCATGAACGACCCTGCAAAGCAGAGCCCATGGAAAATTGCCACTGTAACCAGCATAGAAGAAGTGAAGATGGTAGTCAAATTGTTGCCCATATGGTCTACTTG

Fln Alignment:

biogeco2_mira_c4881___LHLSNSESANIVTNFMGTLYLLSLFGGFLADSVLGRFKAIVIFGSIQALGVCLLAISTSLPSLQPPPCSGNHVEYCAPASGKMMAMLYVSLYLTALGAGSVKSNVSGFGSDQFDVEDPKESGKLIYFFNRFYFCISMGSLFAVTVLVYIQDNVGRGLGYGIPSGSMAFCVLLFLVFSNKYRYRRPAGSPVTRIVQVFVAAWRNRKRSLPSDPSLL-NENEYGVAMGPGRERISHTDQLLCLDKAAIVDPSMNDPAKQ--SPWKIATVTSIEEVKMVVKLLPIWS
C0PQS8_________________LHLPPVTAANTLTNFGGTASLTPLLGAFIADSYVGRFWTIAVSSLIYQIGMVILTISAILPNLRPPPCSGKEV--CKQASAGQLGILYFSLLLTALGSGGIRPCVVAFGADQFDEKDPKQGKKMWNFFNWYYFCMGLSILLAVTVIVYIQENIGWGWGLGIPTAAMAVSIVFFVMGLPLYRHFKPAGSPLTRLLQVIVASIKKRNLLKPSDPSLLYQDKEKDAAISPS-GCLTHTNQLTFFDAAAILTDSDKPESARSPSPWRLCTVHQVEELKSIIRMGPIWA

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
392	33			66	0.997476
394		66	33		0.997464
395			33	66	0.997464
396			33	66	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain