SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9363

Length: 351 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9363
GTGATATTATTGGGCTGGACTCTAGTCGACAATTTTATTGTTTGTAGAGTCAGGAGGGCAGGCTAAAAAAGACTTGCGAATACCACGTTCTATACTTGGTGCTGCAGGACAGATGGAAATTCGTTCTGATCTTGTCGATGCACATTTATATGCTTTCAGAAGAACTATATTGCAGGATGTTCTGGATCGAAGGCCTGAAATCCGCAGCATAAAGCATGACCTGGTGCCGTATCTTGTAAGGTCACAGCTGAGATATGAACTTTCAACAAACAGTGAAGTACAAACAGAAGAAACTAGGAATGGAAGCCCTGCTCTGCAAAACGACAATTCATGGCAGCAGCAAATTCCTGG

Ace file of the UniGene biog2_v2.0_unigene9363 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27574	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	translation initiation factor eIF-2B gamma subunit [Arabidopsis thaliana] gb\|ABF59254.1\| unknown protein [Arabidopsis thaliana] gb\|AED92716.1\| translation initiation factor eIF-2B gamma subunit [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Translation initiation factor eIF-2B gamma subunit; Arabidopsis thaliana (Mouse-ear cress).	-	-	50%
Blast2go	translation initiation factor eif-2b subunit gamma-like	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	-
Sma3	NLI interacting factor	IPR004274	-	-
Sma3	Nucleotidyl transferase	IPR005835	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q1G3F7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 175 aas, your sequence is shorter than subject: 116 - 456

Fln protein: *YYWAGL*STILLFVESGGQAKKDLRIPRSILGAAGQMEIRSDLVDAHLYAFRRTILQDVLDRRPEIRSIKHDLVPYLVRSQLRYELSTNSEVQTEETRNGSPALQNDNSWQQQIP

Protein Length: 117

Fln nts: GTGATATTATTGGGCTGGACTCTAGTCGACAATTTTATTGTTTGTAGAGTCAGGAGGGCAGGCTAAAAAAGACTTGCGAATACCACGTTCTATACTTGGTGCTGCAGGACAGATGGAAATTCGTTCTGATCTTGTCGATGCACATTTATATGCTTTCAGAAGAACTATATTGCAGGATGTTCTGGATCGAAGGCCTGAAATCCGCAGCATAAAGCATGACCTGGTGCCGTATCTTGTAAGGTCACAGCTGAGATATGAACTTTCAACAAACAGTGAAGTACAAACAGAAGAAACTAGGAATGGAAGCCCTGCTCTGCAAAACGACAATTCATGGCAGCAGCAAATTCCTGG

Fln Alignment:

biogeco2_mira_c4848___LLFVESGGQAKKDLRIPRSILGAAGQMEIRSDLVDAHLYAFRRTILQDVLDRRPEIRSIKHDLVPYLVRSQLRYEL-STNSEVQTEETRNGSPALQNDNSWQQQI
Q1G3F7_________________LLYIAKGTEIKKDTRVKKSILCAAGKMEIRSDLMDSHIYAFKRAVLQEVLDQKPAFRSLKQDVLPYLVRTQLRSDVFSDQSNVEENGNGNGKNNMQNNEVVLSQI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain