SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9358

Length: 1446 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene9358 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15782	39/43
SustainPine v2.0	sp_v2.0_unigene60346	4/43

Source	Descriptions	Term	Type	Identity
AutoFact	BURP domain-containing protein n=2 Tax=Glycine max RepID=B2ZPK6_SOYBN	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	burp domain-containing protein	-	-	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	BURP domain	IPR004873	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSN2

Fln msg:

Fln protein: MACNMWFTTALVVVVLLHVALSSEEVQAKSSASPTLSYWHSKLPRTPIPDALQELIFPFSSQKTSELLNAIREGNKVSTGEPALEPKLGRKGGPDASTQPIAPESLIRYGSAADDDAIIADPSLSAMFFLEEDLRIGAKLTLYRKNLERSSPDSRIFFLPRRLAEAISFSSDKLSVALEMLNISQGSHTALAMKETLQVCESPANSGEIKYCPTSLESMIDYATSTLGTSGVSVLETNVPCNLNSQRYTITGIPFQSKSGLKSVICHSLTYPYAVYYCHQSHQTTAARVSLKGDDGSTGEGVTVCHTDTSGWNPQHLAFKVLNVKPGGAPICHFVSGEQVLWVPVN*

Protein Length: 348

Fln nts: ATGGGGACACGCAAACTGATCAACGTGATTCAGGATAATACTATTTTGAAGGATTTGCTTTCATTTTCAACATAGTGATTGATGC_-_ATGGCATGCAACATGTGGTTTACTACTGCCCTCGTTGTTGTTGTTCTGCTGCATGTGGCACTGTCCAGTGAAGAAGTGCAGGCTAAGTCTTCTGCATCTCCGACATTGAGTTACTGGCATAGCAAGTTGCCAAGGACGCCCATTCCCGATGCTCTGCAGGAACTCATTTTCCCTTTCTCATCCCAGAAGACGTCGGAACTGCTGAACGCGATAAGAGAGGGTAACAAAGTTTCTACAGGAGAACCTGCCCTTGAACCTAAACTTGGGCGCAAAGGAGGGCCGGATGCCAGCACCCAACCCATCGCGCCGGAAAGCCTGATACGTTACGGTTCCGCGGCAGACGACGATGCCATCATAGCCGACCCTTCCTTGTCGGCGATGTTCTTCCTGGAGGAGGACTTGCGCATTGGAGCAAAGTTGACGCTCTACAGAAAAAATCTAGAGAGATCAAGCCCGGACAGTAGAATATTCTTCCTTCCGCGTCGTCTAGCTGAAGCTATTTCATTCTCGTCTGATAAACTCTCAGTAGCCTTGGAGATGCTCAACATATCCCAAGGATCCCACACAGCTCTTGCTATGAAGGAGACTTTACAAGTGTGTGAAAGTCCGGCAAATAGTGGAGAGATCAAATATTGCCCAACATCTTTGGAATCCATGATTGATTACGCCACATCGACTTTGGGGACCAGTGGTGTGAGTGTGTTAGAGACGAATGTACCCTGCAACCTCAACTCTCAGCGATATACTATCACTGGCATTCCTTTCCAGAGCAAATCCGGCTTAAAGTCAGTGATTTGTCACAGCCTGACATATCCATACGCCGTGTACTATTGCCATCAAAGTCACCAGACCACCGCTGCGCGGGTGTCTCTCAAGGGCGACGATGGCAGCACTGGAGAGGGAGTGACGGTGTGTCACACAGACACAAGTGGGTGGAATCCTCAACACTTGGCGTTCAAGGTTCTCAATGTCAAGCCCGGTGGTGCACCCATCTGCCACTTCGTCTCTGGCGAACAAGTTCTCTGGGTCCCTGTCAACTAG___ATTCTCTATCTACGTATCATCTACAATCTGTATCTAGTGTGTATTGCTCTTCTCCTTCTCTGTATTCGACGAGAAGATCAAGCCTATAGTGCCCCGCTTTTACGGCGCCATAAGATATATATGGACTGCCGTAAATAAATAACGACGGCACCACATTATATAAAATCATATCCAATGAAGTCCCATCGTCGCCTATTGTAAATGATAACGGGGCCGGCCTATGGACCATCCGCCCCACAATATTGGCTTTGACCATCTATGTAGTCGTTGTATTTTGTATAATGTTTTTATGACAATAATGAAAATATGTGTGTTGTGAC

Fln Alignment:

biogeco2_mira_c4839___AKSSASPTLSYWHSKLPRTPIPDALQELIFPFSSQKTSELLNAIREGNKVSTGEPALEPKLGRKGGPDASTQPIAPESLIRYGSXXXXXXXXXDPSLSAMFFLEEDLRIGAKLTLYRKNLERSSPDSRIFFLPRRLAEAISFSSDKLSVALEMLNISQGSHTALAMKETLQVCESPANSGEIKYCPTSLESMIDYATSTLGTSGVSVLETNVPCNLNSQRYTITGIPFQSKSGLKSVICHSLTYPYAVYYCHQSHQTTAARVSLKGDDGSTGEGVTVCHTDTSGWNPQHLAFKVLNVKPGGAPICHFVSGEQVLWVP
C0PSN2_________________AKSSTSPTLSYWHLNLPTTPIPDTLRELISPLSSEKTSELLDAIREGKKVSMAEPDPTPKLGRKGGPDSVASQV-PQGIYIYGSAADDDIIAD-PSVSAMFFHEKDLHTGRKLTLYSTLLKRSSPDNRVFFLPRRLAEAIPFSSDKLSVALEKLDISQGSDTALAMKQTLKACEGPANSGERRYCATSLESMIDYTTSTLGTSSLNVLETNVPCKLESQKYTITGIPFQSKSGSKAVVCHSETYAYAVYYCHEAQHITTARVSLKGEDGSSGEGVAVCHTDTSGWNPQHLAFKVLNVKPGGAPVCHFVPNGEVLWLP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
495		11		88	0.991528
496		11		88	0.991528
497		11	88		0.991528
499			88	11	0.991528
690	66	33			0.997452
692	66			33	0.997452
859	33		33		0.999775
923		80		20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1317	1328	AAC AAC AAC AAC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain