SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9354

Length: 516 nt

UniGene Fasta

>biog2_v2.0_unigene9354
ATGGGAACATGGTCAAGGAGCATAACTACTATGAAAGATTAAACATACCCATGAGTATTTTTGGCAGATTCCCCAGTATTTCTTAATAGGTGCTTCTGAAATTTTCACCTTCATAGGGCAACTAGAGTTCTTTTATGATCAAGCACCTGACGCTATGCGAAGCTTAATGAGTGCACTTTCACTTACTACAGTTGCATTAGGCAATTACCTGAGTACTCTGCTGGTTACCATTGTAACTGACACTACAACAAGGCATGGAAAGAAAGGATGGATTCCCGATAACTTGAACTATGGACATATTGATTACTTCTTTTGGCTTCTGGCCATCCTGAGCACTCTGAACTTTCTGGTCTATCTTTAATTTCACGTTGGTACACATACAAGAGAGCCACAGGAGTGTTCCACGTAAGCAAGTAAGCCTATTCATTCAGAAGGTGCACTAGCAGCCCCTCTAGATTCATACAAATATTTTCTGCAGATGTGATGTTGCTGAAAGAAGTAAATTCAAATTGAGAC

Ace file of the UniGene biog2_v2.0_unigene9354

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9264	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Peptide transporter, putative n=1 Tax=Ricinus communis RepID=B9T6M4_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	proton-dependent oligopeptide transport family protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	tripeptide transport	GO:0042939	Biological Process	82%
Blast2go	nitrogen compound metabolic process	GO:0006807	Biological Process	82%
Blast2go	pollen tube growth	GO:0009860	Biological Process	82%
Blast2go	dipeptide transport	GO:0042938	Biological Process	82%
Blast2go	dipeptide transporter activity	GO:0042936	Molecular Function	82%
Blast2go	tripeptide transporter activity	GO:0042937	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%
Blast2go	integral to membrane	GO:0016021	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 120 - 594

Fln protein: WEHGQGA*LL*KIKHTHEYFWQIPQYFLIGASEIFTFIGQLEFFYDQAPDAMRSLMSALSLTTVALGNYLSTLLVTIVTDTTTRHGKKGWIPDNLNYGHIDYFFWLLAILSTLNFLVYL*

Protein Length: 121

Fln nts: ATGGGAACATGGTCAAGGAGCATAACTACTATGAAAGATTAAACATACCCATGAGTATTTTTGGCAGATTCCCCAGTATTTCTTAATAGGTGCTTCTGAAATTTTCACCTTCATAGGGCAACTAGAGTTCTTTTATGATCAAGCACCTGACGCTATGCGAAGCTTAATGAGTGCACTTTCACTTACTACAGTTGCATTAGGCAATTACCTGAGTACTCTGCTGGTTACCATTGTAACTGACACTACAACAAGGCATGGAAAGAAAGGATGGATTCCCGATAACTTGAACTATGGACATATTGATTACTTCTTTTGGCTTCTGGCCATCCTGAGCACTCTGAACTTTCTGGTCTATCTTTAA___TTTCACGTTGGTACACATACAAGAGAGCCACAGGAGTGTTCCACGTAAGCAAGTAAGCCTATTCATTCAGAAGGTGCACTAGCAGCCCCTCTAGATTCATACAAATATTTTCTGCAGATGTGATGTTGCTGAAAGAAGTAAATTCAAATTGAGAC

Fln Alignment:

biogeco2_mira_c4834___FWQIPQYFLIGASEIFTFIGQLEFFYDQAPDAMRSLMSALSLTTVALGNYLSXXXXXXXXXXXXRHGKKGWIPDNLNYGHIDYFFWLLAILSTLNFLVYL
A9NVR2_________________FWQIPQYFLVGASEVFTFVGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSLIVTIVMFATTKGGNIGWIPDNLNEGHLDYYFWVLASLSVLNLLVYV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain