SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9336

Length: 449 nt

UniGene Fasta

>biog2_v2.0_unigene9336
AGAGAAGAGTGCCAGTGTTGTCACAGTGCAAGGCCTTGATTTTGCAGAATGGTTGAAGAACACTATTACTAGACAGGACTTTGTCGTGATGCAGATGGATGTGGAGGGTGCAGAGTTCGATTTGTTGCCGAGGATGTTTGAGACAGGTGCTATTTGCTTAATTGACGAGCTGTTCCTTGAATGCCATTACAACCGATGGCAGAGATGCTGCCCAGAGAGGACCCCCAAATATCAGAAGACTTATGGAGAGTGTCTAGATTTGTTTAATTCCCTAAGGAAGAATGGTGTCCTTGTGCATCAGTGGTGGTGACACGTTCATAAACAGTACATGCTGCTGTTCTGGTCTTTTGGGTAATTTGGGCTACTGTTTGCCAAAGGGGTCAAGGTACTTGTTAAGAATGATATGTTTTCTCTAATGATAAACATGAAAGTTATATTTTGTTTCATGT

Ace file of the UniGene biog2_v2.0_unigene9336

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26478	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	methyltransferase [Arabidopsis thaliana] emb\|CAB82287.1\| putative protein [Arabidopsis thaliana] gb\|AAL07072.1\| unknown protein [Arabidopsis thaliana] gb\|AAN13203.1\| unknown protein [Arabidopsis thaliana] gb\|AAN60352.1\| unknown [Arabidopsis thaliana] gb\|A	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	protein	-	-	65%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Initiation factor eIF-4 gamma, MA3	IPR003891	-	-
Sma3	Methyltransferase FkbM	IPR006342	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADW7

Fln msg: your sequence is shorter than subject: 103 - 188

Fln protein: EKSASVVTVQGLDFAEWLKNTITRQDFVVMQMDVEGAEFDLLPRMFETGAICLIDELFLECHYNRWQRCCPERTPKYQKTYGECLDLFNSLRKNGVLVHQWW*

Protein Length: 104

Fln nts: AGAGAAGAGTGCCAGTGTTGTCACAGTGCAAGGCCTTGATTTTGCAGAATGGTTGAAGAACACTATTACTAGACAGGACTTTGTCGTGATGCAGATGGATGTGGAGGGTGCAGAGTTCGATTTGTTGCCGAGGATGTTTGAGACAGGTGCTATTTGCTTAATTGACGAGCTGTTCCTTGAATGCCATTACAACCGATGGCAGAGATGCTGCCCAGAGAGGACCCCCAAATATCAGAAGACTTATGGAGAGTGTCTAGATTTGTTTAATTCCCTAAGGAAGAATGGTGTCCTTGTGCATCAGTGGTGGTGA___CACGTTCATAAACAGTACATGCTGCTGTTCTGGTCTTTTGGGTAATTTGGGCTACTGTTTGCCAAAGGGGTCAAGGTACTTGTTAAGAATGATATGTTTTCTCTAATGATAAACATGAAAGTTATATTTTGTTTCATGT

Fln Alignment:

biogeco2_mira_c4802___SASVVTVQGLDFAEWL-KNTITRQDFVVMQMDVEGAEFDLLPRMF---ETGAICLIDELFLECHYNRWQRCCPERTPKYQKTYGECLDLFNSLRKNGVLVHQW
D5ADW7_________________SSSESDTAGLDIEGWLSKMNVSDDDFVVMKMGFEHVTKEMIREMMIESGTGFMCLIDELFLQCSSSSSQDDYNEGL--IEEVNGECMQFLQTLRDHGVFVHRW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain