SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9328

Length: 367 nt

UniGene Fasta

>biog2_v2.0_unigene9328
ATGGGGGAGTTGGTGAGGCTCAGGGTAAAGCGCATGCCCTGCAGAATCCAGAGAAGCAAACAGGTACGTTGAAGGAACAACTAGCTGCCATTGCGCCAGGTTTGGGTGATCTAAGGAGAAAAAGGAGGAGAGGGTCAAGAAGTTTATGGACGTTCAAGGGCAGATTCAGAGTATCTGTGCAGAAATTGCAGGAATTTTGAATGTGAATGGTTTATGTACAACTCCAAAAGTGGATGAGCATGATCTATCTCTAAAGAAACTTGACGAATTCCATGCTCAACTTCAAGAGCTTCATAGAGAAAAGAATGATAGACTTCAGAAAGTTTTTGACTATGTTAACACTGTGCATGCTCTTTCGGCTGTCATG

Ace file of the UniGene biog2_v2.0_unigene9328

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7389	1/2
SustainPine v2.0	sp_v2.0_unigene32231	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein regulator of cytokinesis, putative n=1 Tax=Ricinus communis RepID=B9SYY2_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	microtubule-associated protein map65-1a	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	anaphase	GO:0051322	Biological Process	79%
Blast2go	microtubule bundle formation	GO:0001578	Biological Process	79%
Blast2go	cytokinesis	GO:0000910	Biological Process	79%
Blast2go	cortical microtubule organization	GO:0043622	Biological Process	79%
Blast2go	microtubule nucleation	GO:0007020	Biological Process	79%
Blast2go	positive regulation of microtubule polymerization	GO:0031116	Biological Process	79%
Blast2go	microtubule binding	GO:0008017	Molecular Function	79%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	79%
Blast2go	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	79%
Blast2go	preprophase band	GO:0009574	Cellular Component	79%
Blast2go	spindle	GO:0005819	Cellular Component	79%
Blast2go	phragmoplast	GO:0009524	Cellular Component	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC28

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 397 aas, your sequence is shorter than subject: 122 - 596

Fln protein: WGSW*GSG*SACPAESREANRYVEGTTSCHCARFG*SKEKKEERVKKFMDVQGQIQSICAEIAGILNVNGLCTTPKVDEHDLSLKKLDEFHAQLQELHREKNDRLQKVFDYVNTVHALSAVM

Protein Length: 123

Fln nts: ATGGGGGAGTTGGTGAGGCTCAGGGTAAAGCGCATGCCCTGCAGAATCCAGAGAAGCAAACAGGTACGTTGAAGGAACAACTAGCTGCCATTGCGCCAGGTTTGGGTGATCTAAGGAGAAAAAGGAGGAGAGGGTCAAGAAGTTTATGGACGTTCAAGGGCAGATTCAGAGTATCTGTGCAGAAATTGCAGGAATTTTGAATGTGAATGGTTTATGTACAACTCCAAAAGTGGATGAGCATGATCTATCTCTAAAGAAACTTGACGAATTCCATGCTCAACTTCAAGAGCTTCATAGAGAAAAGAATGATAGACTTCAGAAAGTTTTTGACTATGTTAACACTGTGCATGCTCTTTCGGCTGTCATG

Fln Alignment:

biogeco2_mira_c4787___FMDVQGQIQSICAEIAGILNVNGLCTTPKVDEHDLSLKKLDEFHAQLQELHREKNDRLQKVFDYVNTVHALSAVM
D5AC28_________________FMDVQVQIQSICAEIAGNLNVNDLCTTPKVDEHDLSLKKLDEFHDQLQELHREKNDRLQKVFDYVNTVHALSAVM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain