SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9325

Length: 351 nt

UniGene Fasta

>biog2_v2.0_unigene9325
ATGGGGGGTCAGAACGGATTCTCTATGCTGTAATACATCGTCCCTTCAACAAAGGAAAGCTTTCAAAGTTATTTCTGTCGTGTCCGGTGCTCAAGGTTTTTGGATAAAGGCCTCGACCCGACGTTCAATGGTCTTCGATTCAATTGTCAGGTGGCTATTTTCTGCTTAGTTTTTGCTGAATCACGAATACATCAAACTACATTTAGGTTTGCTGCCATGGCTGGGTCTTTCGCTGTGGAAATGCCTCTGCCTTTACAGGAGATCATGCTGGAGTTTCGGGCTGGCATTATGTCTCTGGAAGGGAGACGGGTTGTGCCAGATACTCGTAAAGGACTTGTTCGTGTGGCTAGG

Ace file of the UniGene biog2_v2.0_unigene9325

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3816	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative adhesion regulating molecule family [Oryza sativa Japonica Group] dbj\|BAG90710.1\| unnamed protein product [Oryza sativa Japonica Group] dbj\|BAG86665.1\| unnamed protein product [Oryza sativa Japonica Group] gb\|EEC79799.1\| hypothetical protein OsI_	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	regulatory particle non-atpase 13	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	cell adhesion	GO:0007155	Biological Process	71%
Blast2go	integral to membrane	GO:0016021	Cellular Component	71%
Blast2go	cytoplasm	GO:0005737	Cellular Component	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	26S proteasome complex ubiquitin receptor, subunit Rpn13	IPR006773	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA20

Fln msg: Distance to subject end: 294 aas, your sequence is shorter than subject: 45 - 339

Fln protein: MAGSFAVEMPLPLQEIMLEFRAGIMSLEGRRVVPDTRKGLVRVAR

Protein Length: 46

Fln nts: ATGGGGGGTCAGAACGGATTCTCTATGCTGTAATACATCGTCCCTTCAACAAAGGAAAGCTTTCAAAGTTATTTCTGTCGTGTCCGGTGCTCAAGGTTTTTGGATAAAGGCCTCGACCCGACGTTCAATGGTCTTCGATTCAATTGTCAGGTGGCTATTTTCTGCTTAGTTTTTGCTGAATCACGAATACATCAAACTACATTTAGGTTTGCTGCC_-_ATGGCTGGGTCTTTCGCTGTGGAAATGCCTCTGCCTTTACAGGAGATCATGCTGGAGTTTCGGGCTGGCATTATGTCTCTGGAAGGGAGACGGGTTGTGCCAGATACTCGTAAAGGACTTGTTCGTGTGGCTAGG

Fln Alignment:

biogeco2_mira_c4782___MAGSFAVEMPLPLQEIMLEFRAGIMSLEGRRVVPDTRKGLVRVAR
D5AA20_________________MAGSFAEELPLSLQEIMLEFRAGMMSLEGTRVVPDTRKGLVRVAR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
155		66		33	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain