SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9296

Length: 406 nt

UniGene Fasta

>biog2_v2.0_unigene9296
CTCTTTGGTTTTGGTTTGTAAACTCTGTGCTTATTCATACATTCCCAATGCTTGAAACCACCCCATTATGTGAATACCTTTGCATCAAGGACAGTTCACATATTCCCGATGTGCTGCGTTTTGAGTACCAGAATGCCATAGCAGCTAGGAAGACGAAGATGGATGCAAAACGTGGAAAACAGGCGAGAACAGATTGAATCAGGCTCTGAAGTGGCTATACAGGTGCTCTTGATATGCGTAGATCAACATTTTTTCCCTTTTGATTACTGTTATTGTTTTCTATTGAATGGGAGTTGCTTAGCATTTCTCAAATCAGCAGCAACACTTGTTAGGGAATAAATATACTGGGAGCAATGACTGTATTATGTGCATTATTACTATCACTATTACTACCATTCTTCTTATT

Ace file of the UniGene biog2_v2.0_unigene9296

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4689	1/3
SustainPine v2.0	sp_v2.0_unigene24905	1/3
SustainPine v2.0	sp_v2.0_unigene76814	1/3

Source	Descriptions	Term	Type	Identity
AutoFact	dolichyldiphosphatase [Arabidopsis thaliana] gb\|AAR23728.1\| At5g03080 [Arabidopsis thaliana] gb\|AAS92345.1\| At5g03080 [Arabidopsis thaliana] dbj\|BAF00841.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED90554.1\| dolichyldiphosphatase [Arabidopsis thal	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dolichyldiphosphatase.	EC:3.6.1.43	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	N-Glycan biosynthesis	00510		0.0	78%
Blast2go	Biosynthesis of terpenoids and steroids	01062		0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	78%
Blast2go	dolichyldiphosphatase activity	GO:0047874	Molecular Function	78%
Blast2go	membrane	GO:0016020	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphatidic acid phosphatase type 2/haloperoxidase	IPR000326	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK99

Fln msg: your sequence is shorter than subject: 65 - 226

Fln protein: LWFWFVNSVLIHTFPMLETTPLCEYLCIKDSSHIPDVLRFEYQNAIAARKTKMDAKRGKQARTD*

Protein Length: 66

Fln nts: CTCTTTGGTTTTGGTTTGTAAACTCTGTGCTTATTCATACATTCCCAATGCTTGAAACCACCCCATTATGTGAATACCTTTGCATCAAGGACAGTTCACATATTCCCGATGTGCTGCGTTTTGAGTACCAGAATGCCATAGCAGCTAGGAAGACGAAGATGGATGCAAAACGTGGAAAACAGGCGAGAACAGATTGA___ATCAGGCTCTGAAGTGGCTATACAGGTGCTCTTGATATGCGTAGATCAACATTTTTTCCCTTTTGATTACTGTTATTGTTTTCTATTGAATGGGAGTTGCTTAGCATTTCTCAAATCAGCAGCAACACTTGTTAGGGAATAAATATACTGGGAGCAATGACTGTATTATGTGCATTATTACTATCACTATTACTACCATTCTTCTTATT

Fln Alignment:

biogeco2_mira_c4739___LWFWFVNSVLIHTFPMLETTPLCEYLCIKDSSHIPDVLRFEYQNAIAARKTKMDAKRGKQARTD
A9NK99_________________LWFWFVNSVLIHTFPMIESAPICEYLCIKDSSHIPDALRFEYQNARAARKATMDAKRGKQARTD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain